chunjiesamliu/scmocha : latest

Latest release: almost 2 years ago - 67 downloads - 1,258 dependencies

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Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
ALL 1.42.0
Amelia 1.8.1
AnnotationDbi 1.62.2
AnnotationFilter 1.24.0
AnnotationHub 3.8.0
AppliedPredictiveModeling 1.1-7
Azimuth 0.4.6
BBmisc 1.13
BH 1.81.0-1
BSgenome 1.68.0
BWStest 0.2.2
BatchQC 1.28.0
BayesFactor 0.9.12-4.4
BiasedUrn 2.0.11
Biobase 2.60.0
BiocFileCache 2.8.0
BiocGenerics 0.46.0
BiocHubsShiny 1.0.0
BiocIO 1.10.0
BiocManager 1.30.22
BiocNeighbors 1.18.0
BiocParallel 1.34.2
BiocSingular 1.16.0
BiocStyle 2.28.0
BiocVersion 3.17.1
Biostrings 2.68.1
BrowserViz 2.22.0
CORElearn 1.57.3
Cairo 1.6-1
CancerSubtypes 1.26.0
ComplexHeatmap 2.16.0
ConsensusClusterPlus 1.64.0
DBI 1.1.3
DESeq2 1.40.2
DEoptimR 1.1-1
DNAcopy 1.74.1
DOSE 3.26.1
DT 0.28
DaMiRseq 2.12.0
DelayedArray 0.26.7
DelayedMatrixStats 1.22.5
DiagrammeR 1.0.10
DiceDesign 1.9
DiceKriging 1.6.0
EDASeq 2.34.0
ExperimentHub 2.8.1
FDb.InfiniumMethylation.hg19 2.2.0
FNN 1.1.3.2
FSelector 0.34
FSelectorRcpp 0.3.11
FactoMineR 2.8
Formula 1.2-5
GEOquery 2.68.0
GGally 2.1.2
GO.db 3.17.0
GOSemSim 2.26.1
GPfit 1.0-8
GSEABase 1.62.0
GSVA 1.48.3
GenSA 1.1.9
GenomeInfoDb 1.36.1
GenomeInfoDbData 1.2.10
GenomicAlignments 1.36.0
GenomicFeatures 1.52.1
GenomicRanges 1.52.0
GetoptLong 1.0.5
GlobalOptions 0.1.2
Gviz 1.44.1
HDF5Array 1.28.1
HDO.db 0.99.1
HGNChelper 0.8.1
Hmisc 5.1-0
IRanges 2.34.1
KEGGREST 1.40.0
KEGGgraph 1.60.0
KMsurv 0.1-5
KernSmooth 2.23-22
MASS 7.3-60
MCMCpack 1.6-3
MLSeq 2.18.0
MSQC 1.1.0
Matrix 1.6-1
MatrixGenerics 1.12.3
MatrixModels 0.5-2
ModelMetrics 1.2.2.2
NMF 0.26
OrganismDbi 1.42.0
PCAtools 2.12.0
PMCMR 4.4
PRROC 1.3.1
ParamHelpers 1.14.1
PearsonDS 1.3.0
PerformanceAnalytics 2.0.4
ProtGenerics 1.32.0
R.cache 0.16.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R2HTML 2.3.3
R6 2.5.1
RANN 2.6.1
RApiSerialize 0.1.2
RBGL 1.76.0
RColorBrewer 1.1-3
RCurl 1.98-1.12
RMySQL 0.10.25
ROCR 1.0-11
RSNNS 0.4-16
RSQLite 2.3.1
RSpectra 0.16-1
RStanTest 0.0.0.9000
RUVSeq 1.34.0
RWeka 0.4-46
RWekajars 3.9.3-2
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.6.1.0
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppML 0.3.7
RcppNumerical 0.5-0
RcppParallel 5.1.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
Rdpack 2.5
RdpackTester 1.0
ReactomePA 1.44.0
ResidualMatrix 1.10.0
Rgraphviz 2.44.0
Rhdf5lib 1.22.0
RhpcBLASctl 0.23-42
Rhtslib 2.2.0
Rmpi 0.7-1
Rsamtools 2.16.0
Rtsne 0.16
Rttf2pt1 1.3.12
S4Arrays 1.0.5
S4Vectors 0.38.1
SQUAREM 2021.1
ScaledMatrix 1.8.1
Seurat 4.3.0.1
SeuratData 0.2.2
SeuratDisk 0.0.0.9020
SeuratObject 4.1.3
ShortRead 1.58.0
SingleCellExperiment 1.22.0
SingleR 2.2.0
SparseM 1.81
SummarizedExperiment 1.30.2
SuppDists 1.1-9.7
TFisher 0.2.0
TH.data 1.1-2
TSP 1.2-4
TTR 0.24.3
TeachingDemos 2.12
TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
V8 4.3.3
VariantAnnotation 1.46.0
VennDiagram 1.7.3
WRS2 1.1-4
XML 3.99-0.14
XVector 0.40.0
abind 1.4-5
ade4 1.7-22
adiposeref.SeuratData 1.0.0
afex 1.3-0
affy 1.78.2
affyio 1.70.0
airway 1.20.0
annotate 1.78.0
apcluster 1.4.10
ape 5.7-1
apeglm 1.22.1
aplot 0.2.0
arm 1.13-1
aroma.light 3.30.0
arrow 12.0.1.1
ash 1.0-15
askpass 1.1
assertthat 0.2.1
babelgene 22.9
backports 1.4.1
ballgown 2.32.0
base64 2.0.1
base64enc 0.1-3
base64url 1.4
base 4.3.1
basilisk.utils 1.12.1
basilisk 1.12.1
batchelor 1.16.0
bayestestR 0.13.1
bbmle 1.0.25
bbotk 0.7.2
bdsmatrix 1.3-6
beachmat 2.16.0
beachtest 1.0.0
beanplot 1.3.1
beeswarm 0.4.0
bench 1.1.3
bigD 0.2.0
bigassertr 0.1.6
biglasso 1.5.2
bigmemory.sri 0.1.6
bigmemory 4.6.1
bigparallelr 0.3.2
bigstatsr 1.5.12
biomaRt 2.56.1
biovizBase 1.48.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
bladderbatch 1.38.0
blob 1.2.4
bluster 1.10.0
bonemarrowref.SeuratData 1.0.0
bookdown 0.35
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom.helpers 1.14.0
broom 1.0.5
bslib 0.5.1
bumphunter 1.42.0
ca 0.71.1
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
car 3.1-2
carData 3.0-5
caret 6.0-94
celldex 1.10.1
cellranger 1.1.0
checkmate 2.2.0
circlize 0.4.15
clValid 0.7
class 7.3-22
classInt 0.4-9
cli 3.6.1
clipr 0.8.0
clock 0.7.0
clue 0.3-64
cluster 2.1.4
clusterProfiler 4.8.2
clusterSim 0.51-3
cmaes 1.0-12
coda 0.19-4
codetools 0.2-19
coin 1.4-2
colorspace 2.1-0
colourpicker 1.3.0
combinat 0.0-8
commonmark 1.9.0
compiler 4.3.1
config 0.3.1
conflicted 1.2.0
contfrac 1.1-12
corpcor 1.6.10
correlation 0.8.4
corrplot 0.92
countrycode 1.5.0
cowplot 1.1.1
cpp11 0.4.6
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
crul 1.4.0
curl 5.0.2
d3r 1.0.1
data.table 1.14.8
data.tree 1.0.0
datasets 4.3.1
datawizard 0.8.0
dbplyr 2.3.3
deSolve 1.36
deldir 1.0-9
dendextend 1.17.1
dendroextras 0.2.3
densvis 1.10.3
desc 1.4.2
devtools 2.4.5
diagram 1.6.5
dials 1.2.0
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.33
diptest 0.76-0
dir.expiry 1.8.0
doMC 1.3.8
doMPI 0.2.2
doParallel 1.0.17
doRNG 1.8.6
doSNOW 1.0.20
docopt 0.7.1
downlit 0.4.3
downloader 0.4
dplyr 1.1.2
dqrng 0.3.0
drake 7.13.5
dtplyr 1.3.1
duckdb 0.8.1-2
e1071 1.7-13
earth 5.3.2
easystats 0.6.0
echarts4r 0.4.5
edgeR 3.42.4
effectsize 0.8.5
egg 0.4.5
ellipse 0.5.0
ellipsis 0.3.2
elliptic 1.4-0
emdbook 1.3.13
emmeans 1.8.8
emoa 0.5-0.2
enrichplot 1.20.1
ensembldb 2.24.0
entropy 1.3.1
epiR 2.0.63
estimability 1.4.1
evaluate 0.21
exactRankTests 0.8-35
extrafont 0.19
extrafontdb 1.0
factoextra 1.0.7
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fastmatch 1.1-4
feather 0.3.5
fetusref.SeuratData 1.0.0
ff 4.0.9
ffpe 1.44.0
fgsea 1.26.0
filelock 1.0.2
fitdistrplus 1.1-11
flashClust 1.01-2
flexmix 2.3-19
flextable 0.9.2
flock 0.7
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontawesome 0.5.2
fontquiver 0.2.1
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
formula.tools 1.7.1
fpc 2.2-10
fs 1.6.3
furrr 0.3.1
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
gargle 1.5.2
gbm 2.1.8.1
gclus 1.3.2
gdtools 0.3.3
genalg 0.2.1
genefilter 1.82.1
generics 0.1.3
geomtextpath 0.1.1
gert 1.9.3
gfonts 0.2.0
ggalluvial 0.12.5
ggalt 0.4.0
ggbeeswarm 0.7.2
ggbio 1.48.0
ggbump 0.1.0
ggcorrplot 0.1.4
ggcoverage 0.7.1
ggforce 0.4.1
ggfun 0.1.2
ggh4x 0.2.5
ggjoy 0.4.1
ggnewscale 0.4.9
ggplot2 3.4.3
ggplotify 0.1.2
ggpubr 0.6.0
ggraph 2.1.0
ggrastr 1.0.2
ggrepel 0.9.3
ggridges 0.5.4
ggsci 3.0.0
ggseqlogo 0.1
ggside 0.2.2
ggsignif 0.6.4
ggtext 0.1.2
ggthemes 4.2.4
ggtranscript 0.99.9
ggtree 3.8.2
ggupset 0.3.0
ggvenn 0.1.10
ggvis 0.4.8
gh 1.4.0
gitcreds 0.1.2
glmGamPoi 1.12.2
glmnet 4.1-8
globals 0.16.2
glue 1.6.2
gmm 1.8
gmoviz 1.12.0
gmp 0.7-2
goftest 1.2-3
googledrive 2.1.1
googlesheets4 1.1.1
gower 1.0.1
gplots 3.1.3
grDevices 4.3.1
graph 1.78.0
graphics 4.3.1
graphite 1.46.0
graphlayouts 1.0.0
grid 4.3.1
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
gridtext 0.1.5
gson 0.1.0
gt 0.9.0
gtable 0.3.4
gtools 3.9.4
gtsummary 1.7.2
h2o 3.42.0.2
hardhat 1.3.0
haven 2.5.3
hdf5r 1.3.8
heartref.SeuratData 1.0.0
heatmaply 1.4.2
here 1.0.1
hgu133plus2cdf 2.18.0
hgu95av2.db 3.13.0
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.6
htmlwidgets 1.6.2
httpcode 0.3.0
httpuv 1.6.11
httr2 0.2.3
httr 1.4.7
humancortexref.SeuratData 1.0.0
hwriter 1.3.2.1
hypergeo 1.2-13
ica 1.0-3
ids 1.0.1
igraph 1.5.1
illuminaio 0.42.0
impute 1.74.1
ineq 0.2-13
infer 1.0.4
ini 0.3.1
insight 0.19.3
interactiveDisplayBase 1.38.0
interp 1.1-4
ipred 0.9-14
irace 3.5
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
janitor 2.2.0
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.7
juicyjuice 0.1.0
kSamples 1.2-9
keras 2.13.0
kernlab 0.9-32
kidneyref.SeuratData 1.0.1
kknn 1.3.1
klaR 1.7-2
km.ci 0.5-6
knitr 1.43
labeling 0.4.2
labelled 2.12.0
lambda.r 1.2.4
later 1.3.1
latex2exp 0.9.6
lattice 0.21-8
latticeExtra 0.6-30
lava 1.7.2.1
lazyeval 0.2.2
leaps 3.1
leiden 0.4.3
lgr 0.4.4
lhs 1.1.6
libcoin 1.0-9
lifecycle 1.0.3
limma 3.56.2
linkXTS 1.0
listenv 0.9.0
littler 0.3.18
lme4 1.1-34
lmerTest 3.1-3
lmtest 0.9-40
lobstr 1.1.2
locfit 1.5-9.8
logspline 2.1.20
lubridate 1.9.2
lumi 2.52.0
mRMRe 2.1.2.1
maftools 2.16.0
magrittr 2.0.3
maps 3.4.1
markdown 1.8
mathjaxr 1.6-0
matrixStats 1.0.0
maxstat 0.7-25
mc2d 0.2.0
mclust 6.0.0
mcmc 0.9-7
memoise 2.0.1
metap 1.8
metapod 1.8.0
methods 4.3.1
methylumi 2.46.0
mgcv 1.9-0
mime 0.12
minfi 1.46.0
miniUI 0.1.1.1
minpack.lm 1.2-3
minqa 1.2.5
mlbench 2.1-3.1
mlr3 0.16.1
mlr3cluster 0.1.8
mlr3data 0.7.0
mlr3filters 0.7.1
mlr3fselect 0.11.0
mlr3hyperband 0.4.5
mlr3learners 0.5.6
mlr3mbo 0.2.1
mlr3measures 0.5.0
mlr3misc 0.12.0
mlr3pipelines 0.5.0-1
mlr3tuning 0.19.0
mlr3tuningspaces 0.4.0
mlr3verse 0.2.8
mlr3viz 0.6.1
mlr 2.19.1
mlrMBO 1.1.5.1
mnormt 2.1.1
modelbased 0.8.6
modeldata 1.2.0
modelenv 0.1.1
modelr 0.1.11
modeltools 0.2-23
moderndive 0.5.5
moments 0.14.1
mongolite 2.7.2
morebeach 1.0.0
morebeachtests 1.0.0
msigdbr 7.5.1
multcomp 1.4-25
multcompView 0.1-9
multidplyr 0.1.3
multtest 2.56.0
munsell 0.5.0
mutoss 0.1-13
mvtnorm 1.2-3
mvtnormAPI 1.0-0
ncvreg 3.14.1
nleqslv 3.3.4
nlme 3.1-163
nloptr 2.0.3
nnet 7.3-19
nor1mix 1.3-0
numDeriv 2016.8-1.1
officer 0.6.2
openssl 2.1.0
openxlsx 4.2.5.2
operator.tools 1.6.3
org.Hs.eg.db 3.17.0
org.Mm.eg.db 3.17.0
org.testing.db 0.1
pROC 1.18.4
packrat 0.9.1
paletteer 1.5.0
palmerpenguins 0.1.1
pamr 1.56.1
pancreasref.SeuratData 1.0.0
pander 0.6.5
paradox 0.11.1
parallel 4.3.1
parallelMap 1.5.1
parallelly 1.36.0
parameters 0.21.1
parsnip 1.1.1
patchwork 1.1.3
pathview 1.40.0
pbapply 1.7-2
pbkrtest 0.5.2
pbmcref.SeuratData 1.0.0
performance 0.10.4
permute 0.9-7
pheatmap 1.0.12
pillar 1.9.0
pins 1.2.1
pixmap 0.4-12
pkgbuild 1.4.2
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2.1
plogr 0.2.0
plotly 4.10.2
plotmo 3.6.2
plotrix 3.8-2
pls 2.8-2
plsVarSel 0.9.10
plyr 1.8.8
plyranges 1.20.0
png 0.1-8
polspline 1.1.23
polyclip 1.10-4
polyester 1.36.0
polynom 1.4-1
prabclus 2.3-2
pracma 2.4.2
praise 1.0.0
praznik 11.0.0
precrec 0.14.2
preprocessCore 1.62.1
presto 1.0.0
prettyunits 1.1.1
prismatic 1.1.1
processx 3.8.2
prodlim 2023.03.31
profmem 0.6.0
profvis 0.3.8
progress 1.2.2
progressr 0.14.0
proj4 1.0-13
promises 1.2.1
propagate 1.0-6
proxy 0.4-27
pryr 0.1.6
ps 1.7.5
pscl 1.5.5.1
psych 2.3.6
purrr 1.0.2
purrrlyr 0.0.8
pwr 1.3-0
qap 0.1-2
qqconf 1.3.2
qs 0.25.5
quadprog 1.5-8
quantreg 5.97
questionr 0.7.8
qvalue 2.32.0
rJava 1.0-6
ragg 1.2.5
randomForest 4.7-1.1
randomForestSRC 3.2.2
ranger 0.15.1
rappdirs 0.3.3
rbibutils 2.2.15
rcmdcheck 1.4.0
reactR 0.4.4
reactable 0.4.4
reactome.db 1.84.0
readr 2.1.4
readxl 1.4.3
recipes 1.0.8
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2.1
report 0.5.7
repr 1.1.6
reprex 2.0.2
reshape2 1.4.4
reshape 0.8.9
restfulr 0.0.15
reticulate 1.31
rgenoud 5.9-0.3
rgl 1.2.1
rhdf5 2.44.0
rhdf5filters 1.12.1
risksetROC 1.0.4.1
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.24
rmio 0.4.0
rms 6.7-0
rngtools 1.5.2
robustbase 0.99-0
roxygen2 7.2.3
rpart.plot 3.1.1
rpart 4.1.19
rprojroot 2.0.3
rsample 1.2.0
rstantools 2.3.1.1
rstatix 0.7.2
rstudioapi 0.15.0
rsvd 1.0.5
rtracklayer 1.60.1
rversions 2.1.2
rvest 1.0.3
s2 1.1.4
sSeq 1.38.0
sandwich 3.0-2
sass 0.4.7
scRNAseq 2.14.0
scales 1.2.1
scater 1.28.0
scattermore 1.2
scatterpie 0.2.1
scatterplot3d 0.3-44
scran 1.28.2
scrime 1.3.5
sctransform 0.3.5
scuttle 1.10.2
see 0.8.0
segmented 1.6-4
selectr 0.4-2
seqinr 4.2-30
seriation 1.5.1
sessioninfo 1.2.2
sf 1.0-14
sfsmisc 1.1-16
shadowtext 0.1.2
shape 1.4.6
shiny 1.7.5
shinyAce 0.4.2
shinyBS 0.61.1
shinydashboard 0.7.2
shinyjs 2.1.0
shinythemes 1.2.0
shinytoastr 2.1.1
showtext 0.9-6
showtextdb 3.0
sigclust 1.1.0.1
siggenes 1.74.0
sitmo 2.0.2
skimr 2.1.5
slider 0.3.0
smoof 1.6.0.3
sn 2.1.1
snakecase 0.11.0
snow 0.4-4
son.of.basilisk 0.99.0
sourcetools 0.1.7-1
sp 2.0-0
spacefillr 0.3.2
sparklyr 1.8.2
sparseMatrixStats 1.12.2
spatial 7.3-17
spatstat.data 3.0-1
spatstat.explore 3.2-1
spatstat.geom 3.2-4
spatstat.random 3.1-5
spatstat.sparse 3.0-2
spatstat.utils 3.0-3
splines 4.3.1
statmod 1.5.0
stats4 4.3.1
stats 4.3.1
storr 1.2.5
stringfish 0.15.8
stringi 1.7.12
stringr 1.5.0
styler 1.10.1
sunburstR 2.1.8
survMisc 0.5.6
survival 3.5-7
survivalROC 1.0.3.1
survminer 0.4.9
sva 3.48.0
sys 3.4.2
sysfonts 0.8.8
systemfonts 1.0.4
tcltk 4.3.1
tensor 1.5
tensorflow 2.13.0
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.10
textshaping 0.3.6
tfautograph 0.3.2
tfruns 1.5.1
tibble 3.2.1
tictoc 1.2
tidygraph 1.2.3
tidymodels 1.1.1
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.4.5
tidyverse 2.0.0
tiff 0.1-11
timeDate 4022.108
timechange 0.2.0
tinytex 0.46
tmvtnorm 1.5
tonsilref.SeuratData 1.0.0
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translations 4.3.1
treeio 1.24.3
triebeard 0.4.1
tune 1.1.2
tweenr 2.0.2
tximport 1.28.0
txtq 0.2.4
tzdb 0.4.0
units 0.8-3
urlchecker 1.0.1
urltools 1.7.3
usethis 2.2.2
utf8 1.2.3
utils 4.3.1
uuid 1.1-1
uwot 0.1.16
vcd 1.4-11
vctrs 0.6.3
vegan 2.6-4
vipor 0.4.5
viridis 0.6.4
viridisLite 0.4.2
visNetwork 2.1.2
vroom 1.6.3
vsn 3.68.0
waldo 0.5.1
warp 0.2.0
webshot 0.5.5
whisker 0.4.1
withr 2.5.0
wk 0.8.0
workflows 1.1.3
workflowsets 1.0.1
writexl 1.4.2
xfun 0.40
xgboost 1.7.5.1
xml2 1.3.5
xopen 1.0.0
xtable 1.8-4
xts 0.13.1
yaml 2.3.7
yardstick 1.2.0
yulab.utils 0.0.8
zeallot 0.1.0
zebrafishRNASeq 1.20.0
zip 2.3.0
zlibbioc 1.46.0
zoo 1.8-12

bash 5.1.16
python 2.7.18
python 3.10.11
python 3.10.12

github.com/evanw/esbuild v0.0.0-20220830001118-78a1e00b2e69
golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8
stdlib 1.19

JRI:JRI *
JRIEngine:JRIEngine *
REngine:REngine *
RWeka:RWeka *
ai.h2o:xgboost4j-linux-gpuv4 1.6.1.24
ai.h2o:xgboost4j-linux-minimal 1.6.1.24
ai.h2o:xgboost4j-osx-minimal 1.6.1.24
ai.h2o:xgboost4j_2.12 1.6.1.24
arpack_combined:arpack_combined *
cfunc_test:cfunc_test *
com.amazonaws:aws-java-sdk-core 1.12.268
com.amazonaws:aws-java-sdk-kms 1.12.268
com.amazonaws:aws-java-sdk-s3 1.12.268
com.amazonaws:aws-java-sdk-sts 1.12.268
com.amazonaws:jmespath-java 1.12.268
com.carrotsearch:java-sizeof 0.0.5
com.esotericsoftware.yamlbeans:yamlbeans 1.06
com.fasterxml.jackson.core:jackson-annotations 2.12.5
com.fasterxml.jackson.core:jackson-annotations 2.13.4
com.fasterxml.jackson.core:jackson-core 2.12.5
com.fasterxml.jackson.core:jackson-core 2.13.4
com.fasterxml.jackson.core:jackson-databind 2.12.5
com.fasterxml.jackson.core:jackson-databind 2.13.4.2
com.fasterxml.jackson.dataformat:jackson-dataformat-cbor 2.13.4
com.fasterxml.jackson.dataformat:jackson-dataformat-xml 2.12.5
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.12.5
com.fasterxml.woodstox:woodstox-core 6.2.4
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-armhf 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-win-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-armhf 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-win-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jnr:jffi 1.2.10
com.github.jnr:jnr-constants 0.9.0
com.github.jnr:jnr-ffi 2.0.7
com.github.jnr:jnr-netdb 1.1.5
com.github.jnr:jnr-posix 3.0.23
com.github.oshi:oshi-core 5.7.4
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.github.virtuald:curvesapi 1.06
com.github.wendykierp:JTransforms 3.1
com.google.api-client:google-api-client 2.0.0
com.google.api.grpc:proto-google-common-protos 2.9.6
com.google.api.grpc:proto-google-iam-v1 1.6.2
com.google.apis:google-api-services-storage v1-rev20220705-2.0.0
com.google.auth:google-auth-library-credentials 1.11.0
com.google.auth:google-auth-library-oauth2-http 1.11.0
com.google.auto.value:auto-value-annotations 1.10
com.google.cloud:google-cloud-core-http 2.8.20
com.google.cloud:google-cloud-core 2.8.20
com.google.cloud:google-cloud-storage 2.13.1
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.8
com.google.code.gson:gson 2.9.1
com.google.errorprone:error_prone_annotations 2.18.0
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 32.0.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-apache-v2 1.42.2
com.google.http-client:google-http-client-appengine 1.42.2
com.google.http-client:google-http-client-gson 1.42.2
com.google.http-client:google-http-client-jackson2 1.42.2
com.google.http-client:google-http-client 1.42.2
com.google.j2objc:j2objc-annotations 2.8
com.google.oauth-client:google-oauth-client 1.34.1
com.google.protobuf:protobuf-java-util 3.21.7
com.google.protobuf:protobuf-java 3.21.7
com.googlecode.matrix-toolkits-java:mtj 1.0.4
com.itextpdf:itextpdf 5.1.2
com.jamesmurty.utils:java-xmlbuilder 0.4
com.jcraft:jsch 0.1.54
com.nimbusds:nimbus-jose-jwt 9.11.3
com.spatial4j:spatial4j 0.3
com.squareup.okhttp:okhttp 2.4.0
com.squareup.okio:okio 1.4.0
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.sun.xml.bind.jaxb:isorelax 20090621
com.zaxxer:SparseBitSet 1.2
commons-beanutils:commons-beanutils 1.8.0
commons-cli:commons-cli 1.2
commons-cli:commons-cli 1.4
commons-codec:commons-codec 1.15
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-io:commons-io 2.11.0
commons-io:commons-io 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
commons-pool:commons-pool 1.6
genepi:genepi-annotate 0.2.0-alpha
genepi:genepi-io 1.2.0
genepi:haplogrep-core 3.0.1
genepi:haplogrep3 3.2.1
h2o-genmodel:h2o-genmodel *
h2o:h2o *
io.javalin:javalin 4.6.7
io.marioslab.basis:template 1.7
jakarta.activation:jakarta.activation-api 1.2.1
jakarta.xml.bind:jakarta.xml.bind-api 2.3.2
javax.activation:javax.activation-api 1.2.0
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.xml.bind:jaxb-api 2.3.1
jline:jline 2.13
joda-time:joda-time 2.10.13
jrt-fs:jrt-fs 11.0.20
log4j:log4j 1.2.17
net.java.dev.msv:xsdlib 2013.6.1
net.lingala.zip4j:zip4j 2.11.2
net.minidev:accessors-smart 2.4.7
net.minidev:json-smart 2.4.7
net.openhft:zero-allocation-hashing 0.9
net.sf.ezmorph:ezmorph 1.0.6
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
no.priv.garshol.duke:duke 1.2
org.antlr:antlr-runtime 3.1.3
org.antlr:antlr4-runtime 4.7.2
org.apache.avalon.framework:avalon-framework-api 4.3.1
org.apache.avalon.framework:avalon-framework-impl 4.3.1
org.apache.avro:avro 1.11.0
org.apache.commons:commons-collections4 4.4
org.apache.commons:commons-compress 1.10
org.kohsuke:libpam4j 1.8
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.12.0
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math3 3.6.1
org.apache.commons:commons-text 1.10.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.directory.api:api-util 1.0.0-M20
org.apache.hadoop:hadoop-annotations 2.8.4
org.apache.hadoop:hadoop-auth 2.8.4
org.apache.hadoop:hadoop-aws 2.8.4
org.apache.hadoop:hadoop-common 2.8.4
org.apache.hadoop:hadoop-hdfs-client 2.8.4
org.apache.hadoop:hadoop-mapreduce-client-core 2.8.4
org.apache.htrace:htrace-core4 4.0.1-incubating
org.apache.httpcomponents:httpclient 4.5.13
org.apache.httpcomponents:httpcore 4.4.13
org.apache.httpcomponents:httpmime 4.5.2
org.apache.logging.log4j:log4j-1.2-api 2.17.1
org.apache.logging.log4j:log4j-api 2.14.1
org.apache.logging.log4j:log4j-api 2.17.1
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.17.1
org.apache.logging.log4j:log4j-core 2.5
org.apache.parquet:parquet-column 1.12.3
org.apache.parquet:parquet-common 1.12.3
org.apache.parquet:parquet-encoding 1.12.3
org.apache.parquet:parquet-format-structures 1.12.3
org.apache.parquet:parquet-hadoop 1.12.3
org.apache.parquet:parquet-jackson 1.12.3
org.apache.pdfbox:fontbox 2.0.7
org.apache.xmlgraphics:batik-anim 1.10
org.apache.xmlgraphics:batik-awt-util 1.10
org.apache.xmlgraphics:batik-bridge 1.10
org.apache.xmlgraphics:batik-codec 1.10
org.apache.xmlgraphics:batik-constants 1.10
org.apache.xmlgraphics:batik-css 1.10
org.apache.xmlgraphics:batik-dom 1.10
org.apache.xmlgraphics:batik-ext 1.10
org.apache.xmlgraphics:batik-extension 1.10
org.apache.xmlgraphics:batik-gui-util 1.10
org.apache.xmlgraphics:batik-gvt 1.10
org.apache.xmlgraphics:batik-i18n 1.10
org.apache.xmlgraphics:batik-parser 1.10
org.apache.xmlgraphics:batik-rasterizer-ext 1.10
org.apache.xmlgraphics:batik-rasterizer 1.10
org.apache.xmlgraphics:batik-script 1.10
org.apache.xmlgraphics:batik-slideshow 1.10
org.apache.xmlgraphics:batik-squiggle-ext 1.10
org.apache.xmlgraphics:batik-squiggle 1.10
org.apache.xmlgraphics:batik-svg-dom 1.10
org.mapdb:mapdb 0.9.9
org.apache.xmlgraphics:batik-svgbrowser 1.10
org.apache.xmlgraphics:batik-svggen 1.10
org.apache.xmlgraphics:batik-svgpp 1.10
org.apache.xmlgraphics:batik-svgrasterizer 1.10
org.apache.xmlgraphics:batik-swing 1.10
org.apache.xmlgraphics:batik-transcoder 1.10
org.apache.xmlgraphics:batik-ttf2svg 1.10
org.apache.xmlgraphics:batik-util 1.10
org.apache.xmlgraphics:batik-xml 1.10
org.apache.yetus:audience-annotations 0.13.0
org.codehaus.jettison:jettison 1.1
org.codehaus.woodstox:stax2-api 4.2.1
org.debian.security.UpdateCertificates:ca-certificates-java *
org.eclipse.jetty.websocket:websocket-api 9.4.11.v20180605
org.eclipse.jetty.websocket:websocket-api 9.4.48.v20220622
org.eclipse.jetty.websocket:websocket-client 9.4.11.v20180605
org.eclipse.jetty.websocket:websocket-client 9.4.48.v20220622
org.eclipse.jetty.websocket:websocket-common 9.4.11.v20180605
org.eclipse.jetty.websocket:websocket-common 9.4.48.v20220622
org.eclipse.jetty.websocket:websocket-server 9.4.11.v20180605
org.eclipse.jetty.websocket:websocket-server 9.4.48.v20220622
org.eclipse.jetty.websocket:websocket-servlet 9.4.11.v20180605
org.eclipse.jetty.websocket:websocket-servlet 9.4.48.v20220622
org.eclipse.jetty:jetty-client 9.4.11.v20180605
org.eclipse.jetty:jetty-client 9.4.48.v20220622
org.eclipse.jetty:jetty-continuation 9.4.11.v20180605
org.eclipse.jetty:jetty-http 9.4.11.v20180605
org.eclipse.jetty:jetty-http 9.4.48.v20220622
org.eclipse.jetty:jetty-io 9.4.11.v20180605
org.eclipse.jetty:jetty-io 9.4.48.v20220622
org.eclipse.jetty:jetty-jaas 9.4.11.v20180605
org.eclipse.jetty:jetty-proxy 9.4.11.v20180605
org.eclipse.jetty:jetty-security 9.4.11.v20180605
org.eclipse.jetty:jetty-security 9.4.48.v20220622
org.eclipse.jetty:jetty-server 9.4.11.v20180605
org.eclipse.jetty:jetty-server 9.4.48.v20220622
org.eclipse.jetty:jetty-servlet 9.4.11.v20180605
org.eclipse.jetty:jetty-servlet 9.4.48.v20220622
org.eclipse.jetty:jetty-servlets 9.4.11.v20180605
org.eclipse.jetty:jetty-util-ajax 9.4.48.v20220622
org.eclipse.jetty:jetty-util 9.4.11.v20180605
org.eclipse.jetty:jetty-util 9.4.48.v20220622
org.eclipse.jetty:jetty-webapp 9.4.48.v20220622
org.eclipse.jetty:jetty-xml 9.4.11.v20180605
org.eclipse.jetty:jetty-xml 9.4.48.v20220622
org.javassist:javassist 3.28.0-GA
org.jetbrains:annotations 13.0
org.jgrapht:jgrapht-core 1.3.1
org.jgrapht:jgrapht-ext 1.3.1
org.jgrapht:jgrapht-io 1.3.1
org.jheaps:jheaps 0.10
org.json:json 20180813
org.nanohttpd:nanohttpd-nanolets 2.3.1
org.nanohttpd:nanohttpd-webserver 2.3.1
org.nanohttpd:nanohttpd 2.3.1
org.sharegov:mjson 1.4.1
org.slf4j:slf4j-api 1.7.32
org.slf4j:slf4j-api 1.8.0-beta4
org.slf4j:slf4j-log4j12 1.7.10
org.slf4j:slf4j-simple 1.8.0-beta4
org.threeten:threetenbp 1.6.2
picard:picard 2.18.21-SNAPSHOT
pl.edu.icm:JLargeArrays 1.5
software.amazon.ion:ion-java 1.0.2
sparklyr-master:sparklyr-master 2.12
sparklyr:sparklyr 1.5-2.10
sparklyr:sparklyr 1.6-2.10
sparklyr:sparklyr 2.0-2.11
sparklyr:sparklyr 2.3-2.11
sparklyr:sparklyr 2.4-2.11
sparklyr:sparklyr 2.4-2.12
weka:weka *

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
bvDemo 2.0.6
casperjs 1.1.0-beta5
d2b 1.0.9
d3-jetpack 2.0.9
jupyterlab-plotly 5.9.0
mobx 5.10.1

Bottleneck 1.3.5
ConfigArgParse 1.7
GDAL 3.4.1
GitPython 3.1.40
Jinja2 3.1.2
MarkupSafe 2.1.1
MarkupSafe 2.1.3
Pillow 10.1.0
Pillow 9.4.0
PuLP 2.7.0
PyVCF3 1.0.3
PyYAML 6.0.1
altair 5.0.1
appdirs 1.4.4
argparse 1.2.1
attrs 22.1.0
attrs 23.1.0
biopython 1.78
biopython 1.81
cached-property 1.5.2
certifi 2023.7.22
charset-normalizer 3.3.1
click 8.1.7
connection-pool 0.0.3
contourpy 1.1.1
cycler 0.12.1
datrie 0.8.2
docutils 0.20.1
dpath 2.1.6
exceptiongroup 1.1.3
fastjsonschema 2.18.1
fonttools 4.43.1
future 0.18.3
gitdb 4.0.11
h5py 3.6.0
humanfriendly 10.0
idna 3.4
iniconfig 2.0.0
joblib 1.2.0
jsonschema-specifications 2023.7.1
jsonschema 4.17.3
jsonschema 4.19.1
jupyter_core 5.4.0
kiwisolver 1.4.5
lz4 4.3.2
matplotlib 3.8.0
mgatk 0.6.9
mkl-fft 1.3.1
mkl-random 1.2.2
mkl-service 2.4.0
mypy 0.931
nbformat 5.9.2
numexpr 2.8.4
numpy 1.21.5
numpy 1.23.5
numpy 1.24.3
optparse-pretty 0.1.1
packaging 23.0
packaging 23.2
pandas 1.5.3
pandas 2.1.1
patsy 0.5.3
pip 22.0.2
plac 1.4.0
platformdirs 3.11.0
plotly 5.9.0
pluggy 1.3.0
psutil 5.9.6
py-cpuinfo 8.0.0
pybktree 1.1
pydata-sphinx-theme 0.9.0
pyfaidx 0.7.2.1
pyparsing 3.1.1
pyrsistent 0.18.0
pysam 0.21.0
pysam 0.22.0
pytest 7.4.2
python-dateutil 2.8.2
pytz 2022.7
pytz 2023.3.post1
referencing 0.30.2
regex 2023.10.3
requests 2.31.0
reretry 0.11.8
rpds-py 0.10.6
ruamel.yaml.clib 0.2.8
ruamel.yaml 0.18.0
scikit-learn 1.3.0
scipy 1.10.1
scipy 1.11.3
setuptools 44.1.1
setuptools 59.6.0
setuptools 68.0.0
sinto 0.10.0
six 1.16.0
smart-open 6.4.0
smmap 5.0.1
snakemake 7.32.4
statsmodels 0.14.0
stopit 1.1.2
tables 3.8.0
tabulate 0.9.0
tenacity 8.2.2
threadpoolctl 2.2.0
throttler 1.2.2
tomli 2.0.1
toolz 0.12.0
toposort 1.10
traitlets 5.11.2
typing_extensions 4.7.1
tzdata 2023.3
umi-tools 1.1.4
urllib3 2.0.7
wheel 0.37.1
wrapt 1.15.0
wsgiref 0.1.2
yte 1.5.1

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