ccdlstaging/dr_illumina 1.45.8

robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20250213

biocorecrg/trax 0.2

koki/tensor-projects-parasite 20220819

tercen/opencyto_operator 0.2.0

biodancer/nasap_performance latest

write later

mlepetit/ranalysis 3.3.4

dolphinnext/ont_variant_calling 1.0

eppicenter/mad4hatter sha-cb4911b

prismcmap/sushi v0.0.2

weizhoujp/rchtc 4.3.0

luisas/rannotation_forcats latest

globusgenomics/picrust 1.0

hoonbiolab/hmftools v1.1

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

intelliseqngs/bioconductor r-coverage-stats_v0.1

ccdlstaging/dr_affymetrix 1.45.8

tariship/dev_sync_directories latest

crukcibioinformatics/sequencingbase 9.3.4

almahmoud/workshops-auto-spectratutorials latest

hdsu/etbii2023 latest

nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

prismcmap/base-clue-pseq v0.0.1

cheyne0328/rstudio zxy

sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

nciccbr/ccbr_r_4.3.0 v1

sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

evolomicsmbbt/rna_seq latest

jpdodson/dsrna_docker latest

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

tercen/tracksom_operator 0.1.5

seglh/exomedepth f4716ad

raghukirannavipoint/aldex2 mar23

zymoresearch/bio_resource_builder v1.0

matzieb/shiny-4.0.3-seurat4-spatial latest

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

hoonbiolab/variantannotation_r v1.1

ipbhalle/biobyte latest

qdidiscoveryservices/glimma 4.2.0

chriswyatt/svm1071deseq2limma latest

recetox/xmsanalyzer 2.0.6.1-recetox1

js2264/fourdndata 1.1.0

qdidiscoveryservices/seurat_cell_annotation latest

mattjmeier/r-odaf-hc-prod latest

koki/velocytor 20221015

broadcptac/panoply_so_nmf_report 1_3

koki/workflow 20210327

haileyzhang/phospho-analyst v1.0.2

jpsmith5/peppro 0.10.2

qdidiscoveryservices/bam_to_10x_counts latest

alanocallaghan/high-dimensional-stats-r latest

brianyee/cropseq-essentials 1.0.0

qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

omicschef/rnaseqchef v1.1.4

RNAseqChef, an RNA-seq data controller highlighting gene expression features

sagnikbanerjee15/ngpint 1.0.0

chgyi/bio 3.5.1

tercen/compare_means_operator 0.1.9

canaantt/notitia-ocpu latest

This is part of zager/notitia.

commander121/rmarkdown 4.4.0d-b4

koki/bindsc 20220609

benolson/r_dada2_for_ris latest

haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

tercen/faust_operator 0.1.4

tercen/diffcyt_operator 0.4.4

mfsentma/atacseq latest

andrewrrelmore/genepi_vscode test

skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

chgyi/metaware_rna_denovo latest

qdidiscoveryservices/vcfcompare 1.0

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

chlazaris/dge_env 0.1

alexthiery/archr 3.1

cjchen/gxuclass 1.0

cjchen/tbtoolszone 2.0

smemane20/error_thres_amd_64 latest

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

dhspence/docker-manta 1.5.0

mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

uvarc/rstudio tam5xe

luisas/rde latest

atttilacs/dsp_geomxtools latest

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

tercen/flowcut_operator 0.1.8

tercen/normalyzer_operator 0.1.4

nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

alenaerts/deseq2 v1

nciccbr/ccbr_fraser_1.10.2 latest

jafoltz/sc_python 8

almurphy/mungesumstats latest

mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.