broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

coala/base pre

A simple docker image featuring coala and it's dependencies.

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

nfcore/rnaseq 1.4.2

Docker Image for nf-core/rnaseq project.

veupathdb/rserve 8.2.2

broadinstitute/viral-core 2.0.21

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

broadinstitute/terra-jupyter-aou 2.1.13

rocker/ropensci 3.4.1

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

nfcore/smrnaseq 1.1.0

A Docker container for the nf-core/smrnaseq pipeline.

broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/murasaki v1.68.6-8b1-deb_cv1

biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

biocontainers/murasaki-common v1.68.6-8-deb_cv1

mirekphd/ml-cpu-r36-base latest

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

kbase/kbase sdkbase.latest

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ocdr/dkube-datascience-rs-tf-cpu v2.0.0

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

nfcore/bcellmagic 1.2.0

A preliminary container for the bcellmagic pipeline

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

intelliseqngs/task_bam-metrics 1.2.8

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

nfcore/proteomicslfq 1.0.0

A Docker Container for label free quantification for proteomics data.

nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

intelliseqngs/task_vcf-prepare 1.0.4

mirekphd/ml-cpu-r35-rs 20190201

lucifer001/custom-rs-tf-multiuser gpu

ocdr/ds-apps 1.0.43

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

tercen/runtime-r35 3.5.3-7

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

kbase/kbase_base latest

KBase Base Image containing Core services and runtime

kbase/sdkbase latest

dhspence/docker-sicer latest

tercen/operator_base 1.0.5

recetox/aplcms latest

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

nuest/ten-simple-rules-dockerfiles latest

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/resources longranger_v0.1

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

dhspence/docker-basestation latest

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

qdidiscoveryservices/py3_cellranger 6.1.2

ocdr/dkube-datascience-rs-sk-cpu 0.23.2

nuest/rockerverse-paper latest

rapporteket/rap-dev-data nodata

Tailor-made

mirekphd/ml-cpu-r35-jnb devel_2b2752c

rapporteket/rap-dev latest

veitveit/polystest release-1.6

nuest/rocker-lightgbm latest

A rocker/verse images with Microsoft's LightGBM