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Package Usage : cran : R.methodsS3

Explore the latest package usage data for R.methodsS3 in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 602
Total downloads: 1,957,495
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.8.2
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
atingupta2005/rocker_tidyverse latest

  • version: 1.7.1
Latest release: about 6 years ago - 58 downloads - 1,055 dependencies
btrspg/r-env cache

  • version: 1.8.2
Latest release: 8 months ago - 315 downloads - 2,231 dependencies
princessmaximacenter/cnv-tools 3.2.0

  • version: 1.8.2
Latest release: 5 months ago - 1,619 downloads - 481 dependencies
ijapesigan/r2u 2025-10-31-01182782

  • version: 1.8.2
Latest release: about 1 month ago - 12,982 downloads - 1,325 dependencies
6214247/data-lab latest

  • version: 1.8.2
Latest release: over 2 years ago - 231 downloads - 2,128 dependencies
koki/urchin_workflow_seurat 20250213

  • version: 1.8.2
Latest release: 10 months ago - 183 downloads - 1,471 dependencies
vnijs/rsm-msba-intel-jupyterhub 3.0.0

  • version: 1.8.2
Latest release: about 1 year ago - 855 downloads - 3,363 dependencies
inseefrlab/onyxia-sparkr r4.5.2-spark3.5.7-2025.11.03

A minimal R environment configured to use Spark through the SparkR package.

  • version: 1.8.2
Latest release: about 1 month ago - 7,431 downloads - 2,922 dependencies
vnmd/afni_22.1.14 latest

  • version: 1.8.2
Latest release: over 3 years ago - 112 downloads - 2,186 dependencies
inseefrlab/travail-collaboratif 0.1.0

  • version: 1.8.2
Latest release: about 3 years ago - 192 downloads - 1,119 dependencies
dhspence/docker-cnvkit2 latest

now emacs enhanced!

  • version: 1.7.1
Latest release: about 7 years ago - 194 downloads - 619 dependencies
tercen/opencyto_operator 0.2.0

  • version: 1.8.0, 1.8.1
Latest release: over 3 years ago - 71 downloads - 1,514 dependencies
vanessa/seurat latest

  • version: 1.7.1
Latest release: over 7 years ago - 54 downloads - 475 dependencies
vnijs/rsm-msba-intel 3.0.0

  • version: 1.8.2
Latest release: over 1 year ago - 2,387 downloads - 3,362 dependencies
genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

  • version: 1.8.2
Latest release: over 2 years ago - 356 downloads - 3,654 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.8.0, 1.8.1
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 1.8.1
Latest release: 9 months ago - 10,896 downloads - 633 dependencies
btrspg/genekitr 0.0.1

  • version: 1.8.2
Latest release: over 1 year ago - 198 downloads - 1,987 dependencies
coursekata/essentials-builder sha-b45af8d

  • version: 1.8.2
Latest release: almost 2 years ago - 1,307 downloads - 1,730 dependencies
vnmd/afni_20.3.01 latest

  • version: 1.8.1
Latest release: about 5 years ago - 37 downloads - 937 dependencies
prismcmap/sushi v0.0.2

  • version: 1.8.2
Latest release: almost 4 years ago - 1,331 downloads - 723 dependencies
liquidityai/dev_shiny de49621059feb0ecb7242147b4e1721b066f20e5

  • version: 1.8.2
Latest release: over 1 year ago - 24,720 downloads - 1,138 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.8.2
Latest release: over 2 years ago - 149 downloads - 512 dependencies
tariship/dev_sync_directories latest

  • version: 1.8.2
Latest release: about 2 years ago - 379 downloads - 421 dependencies
gesiscss/binder-darribas-2dgds-5fucm19-a1b96e 27cbafcf6a865910a18b835a4efc47e9fd532696

  • version: 1.7.1
Latest release: almost 6 years ago - 81 downloads - 1,567 dependencies
ctomlins/score latest

  • version: 1.8.0
Latest release: almost 3 years ago - 47 downloads - 799 dependencies
loukaszagkoslcpuk/lcphaomicscoloc latest

  • version: 1.8.2
Latest release: about 2 years ago - 26 downloads - 896 dependencies
crukcibioinformatics/sequencingbase 9.3.4

  • version: 1.8.2
Latest release: 9 months ago - 323 downloads - 1,183 dependencies
gesiscss/binder-ljcolling-2dfischer-2dbinder-a55eb0 0c95fab086c38e0551a01c40d53ae66232e95552

  • version: 1.7.1
Latest release: over 5 years ago - 105 downloads - 323 dependencies
rocker/ropensci 3.4.1

  • version: 1.7.1
Latest release: about 8 years ago - 88,870 downloads - 1,589 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 1.8.2
Latest release: about 4 years ago - 116 downloads - 318 dependencies
databrewllc/reconmonitoring d0dd994

  • version: 1.8.2
Latest release: almost 3 years ago - 184 downloads - 321 dependencies
islasgeci/clean_k9_data da43

  • version: 1.8.2
Latest release: almost 2 years ago - 315 downloads - 513 dependencies
cheyne0328/rstudio zxy

  • version: 1.8.2
Latest release: over 2 years ago - 24 downloads - 775 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.7.1
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
mgaloto/flexdash_high 01

  • version: 1.8.2
Latest release: over 2 years ago - 321 downloads - 190 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.8.2
Latest release: over 2 years ago - 155 downloads - 679 dependencies
nathanprovin/cellcom 1.2.2

  • version: 1.8.2
Latest release: over 2 years ago - 147 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 1.8.2
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
tercen/tracksom_operator 0.1.5

  • version: 1.8.0, 1.8.1
Latest release: over 2 years ago - 144 downloads - 760 dependencies
gesiscss/binder-wlandau-2dlearndrake-4eaf31 37504de3434ab3b0fedf8680a95efeeb605bef4d

  • version: 1.8.0
Latest release: over 5 years ago - 123 downloads - 447 dependencies
intiquan/iqdesktop latest

  • version: 1.8.1
Latest release: over 2 years ago - 376 downloads - 3,511 dependencies
ijapesigan/rocker 2025-11-21-09230020

  • version: 1.8.2
Latest release: 15 days ago - 26,993 downloads - 1,251 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 1.8.1
Latest release: 5 months ago - 6,397 downloads - 651 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.8.2
Latest release: over 2 years ago - 20 downloads - 1,061 dependencies
afcai2c/r-studio-geo latest

  • version: 1.8.1
Latest release: over 4 years ago - 269 downloads - 2,113 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.8.1
Latest release: about 4 years ago - 110 downloads - 828 dependencies
alessio619/shinywidgets 4.1.2

  • version: 1.8.1
Latest release: almost 4 years ago - 39 downloads - 1,971 dependencies
inseefrlab/onyxia-vscode-r-python-julia r4.5.1-py3.13.7-2025.09.29

  • version: 1.8.2
Latest release: 2 months ago - 3,737 downloads - 1,864 dependencies
nuest/altrnative-paper latest

  • version: 1.7.1
Latest release: almost 6 years ago - 46 downloads - 1,178 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 1.8.1
Latest release: about 4 years ago - 86 downloads - 840 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 1.7.1
Latest release: over 7 years ago - 40 downloads - 9,414 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 1.8.1
Latest release: about 4 years ago - 36 downloads - 811 dependencies
koki/velocytor 20221015

  • version: 1.8.2
Latest release: about 3 years ago - 62 downloads - 1,452 dependencies
hoonbiolab/ascat v1.1

  • version: 1.8.1
Latest release: about 4 years ago - 41 downloads - 792 dependencies
gesiscss/binder-ajstewartlang-2dbinder-5fdemo-a82af5 b2c39fc6050f1879a6707e4a703da12f7c935b1f

  • version: 1.7.1
Latest release: almost 6 years ago - 32 downloads - 1,176 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 1.8.2
Latest release: over 1 year ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 1.8.2
Latest release: almost 3 years ago - 102 downloads - 1,163 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.8.2
Latest release: about 3 years ago - 215 downloads - 962 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.8.2
Latest release: almost 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.8.2
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
omicschef/rnaseqchef v1.1.4

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.8.2
Latest release: 12 months ago - 1,365 downloads - 1,420 dependencies
bpimages/pcalg 2.7-8-arm64

  • version: 1.8.2
Latest release: about 2 years ago - 473 downloads - 361 dependencies
chgyi/bio 3.5.1

  • version: 1.7.1
Latest release: about 7 years ago - 661 downloads - 1,077 dependencies
tercen/compare_means_operator 0.1.9

  • version: 1.8.1
Latest release: over 2 years ago - 196 downloads - 559 dependencies
prismcmap/normalization EPS005

  • version: 1.8.1
Latest release: 5 months ago - 1,176 downloads - 627 dependencies
ciprnd/onyxia-sparkr r4.1.3-spark3.3.1-2023.05.26

  • version: 1.8.2
Latest release: over 2 years ago - 408 downloads - 2,697 dependencies
bpimages/bnlearn 4.8.3

  • version: 1.8.2
Latest release: about 2 years ago - 381 downloads - 349 dependencies
peterdjames/r_base_with_packs_inlc_rkdb latest

  • version: 1.8.1
Latest release: almost 3 years ago - 203 downloads - 1,630 dependencies
educative1/rcourse v3

  • version: 1.8.2
Latest release: about 3 years ago - 30 downloads - 668 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.8.1
Latest release: over 2 years ago - 302 downloads - 1,173 dependencies
bpimages/benchpress 2.1.0

  • version: 1.8.2
Latest release: about 2 years ago - 759 downloads - 514 dependencies
tercen/diffcyt_operator 0.4.4

  • version: 1.8.1
Latest release: almost 2 years ago - 135 downloads - 1,563 dependencies
nuest/reproducible-research-at-giscience latest

  • version: 1.8.0
Latest release: over 4 years ago - 154 downloads - 1,132 dependencies
mfsentma/atacseq latest

  • version: 1.8.2
Latest release: over 2 years ago - 34 downloads - 852 dependencies
bpimages/bidag 2.1.4

BiDAG R package

  • version: 1.8.2
Latest release: over 2 years ago - 468 downloads - 364 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.8.2
Latest release: about 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.8.2
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
hoonbiolab/hl_base v1.2

  • version: 1.8.1
Latest release: about 3 years ago - 177 downloads - 873 dependencies
hoonbiolab/sequenza v1.1

  • version: 1.8.1
Latest release: about 4 years ago - 36 downloads - 801 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.8.2
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
ijapesigan/rarch 2024-12-29-00501041

  • version: 1.8.2
Latest release: 11 months ago - 3,003 downloads - 897 dependencies
alexthiery/archr 3.1

  • version: 1.8.2
Latest release: over 2 years ago - 202 downloads - 819 dependencies
cjchen/gxuclass 1.0

  • version: 1.8.2
Latest release: over 2 years ago - 19 downloads - 657 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.8.2
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.8.2
Latest release: almost 3 years ago - 21 downloads - 2,271 dependencies
chanyu020816/rchss_gis latest

  • version: 1.8.0
Latest release: over 2 years ago - 49 downloads - 1,855 dependencies
evolbioinfo/r-evol v4.2.2

r with ape and big.phylo packages

  • version: 1.8.2
Latest release: over 2 years ago - 155 downloads - 594 dependencies
cblefari/onyxia-r-minimal r4.4.2-2025.05.26

  • version: 1.8.2
Latest release: 6 months ago - 1,762 downloads - 1,202 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.7.1
Latest release: almost 7 years ago - 233 downloads - 1,191 dependencies
hoonbiolab/svtools v0.4.0

  • version: 1.8.1
Latest release: almost 2 years ago - 117 downloads - 681 dependencies
gotfrid/just-collect latest

  • version: 1.8.2
Latest release: over 2 years ago - 392 downloads - 1,315 dependencies
ikanx101/r-custom latest

R Studio Server versi ikanx101.com

  • version: 1.8.2
Latest release: almost 3 years ago - 1,656 downloads - 1,729 dependencies