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Package Usage : cran : BiocParallel

Explore the latest package usage data for BiocParallel in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 578
Total downloads: 2,670,367
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 1.32.5
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.28.3
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 1.36.0
Latest release: 8 months ago - 315 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20250213

  • version: 1.32.6
Latest release: 10 months ago - 183 downloads - 1,471 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.24.1
Latest release: almost 5 years ago - 3,042 downloads - 1,044 dependencies
biocorecrg/trax 0.2

  • version: 1.24.1
Latest release: over 2 years ago - 34 downloads - 296 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 1.28.3
Latest release: 3 months ago - 443 downloads - 1,733 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.30.3
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.28.3
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.26.2
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
veitveit/compomicsworkflow dev

  • version: 1.24.0
Latest release: almost 5 years ago - 99 downloads - 537 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 1.24.1
Latest release: 9 months ago - 10,896 downloads - 633 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.32.0
Latest release: almost 3 years ago - 90 downloads - 494 dependencies
btrspg/genekitr 0.0.1

  • version: 1.34.2
Latest release: over 1 year ago - 198 downloads - 1,987 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.34.2
Latest release: 2 months ago - 821 downloads - 739 dependencies
prismcmap/sushi v0.0.2

  • version: 1.24.1
Latest release: almost 4 years ago - 1,331 downloads - 723 dependencies
weizhoujp/rchtc 4.3.0

  • version: 1.34.2
Latest release: over 2 years ago - 141 downloads - 738 dependencies
luisas/rannotation_forcats latest

  • version: 1.20.1
Latest release: about 5 years ago - 46 downloads - 89 dependencies
globusgenomics/picrust 1.0

  • version: 1.28.3
Latest release: almost 3 years ago - 129 downloads - 595 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.26.0, 1.26.2
Latest release: about 4 years ago - 1,322 downloads - 693 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.30.4
Latest release: over 2 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.20.0
Latest release: almost 6 years ago - 22 downloads - 185 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.12.0
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
tariship/dev_sync_directories latest

  • version: 1.32.6
Latest release: about 2 years ago - 379 downloads - 421 dependencies
crukcibioinformatics/sequencingbase 9.3.4

  • version: 1.40.0
Latest release: 9 months ago - 323 downloads - 1,183 dependencies
almahmoud/workshops-auto-spectratutorials latest

  • version: 1.31.3
Latest release: over 3 years ago - 89 downloads - 2,003 dependencies
hdsu/etbii2023 latest

  • version: 1.28.3
Latest release: almost 3 years ago - 138 downloads - 358 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.26.0
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 1.32.3
Latest release: about 3 years ago - 194 downloads - 382 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 1.24.1
Latest release: about 4 years ago - 116 downloads - 318 dependencies
cheyne0328/rstudio zxy

  • version: 1.34.2
Latest release: over 2 years ago - 24 downloads - 775 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 1.34.2
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.34.2
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.32.5
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.28.3
Latest release: almost 3 years ago - 138 downloads - 412 dependencies
jpdodson/dsrna_docker latest

  • version: 1.32.5
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
nathanprovin/cellcom 1.2.2

  • version: 1.34.2
Latest release: over 2 years ago - 147 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 1.30.3
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
seglh/exomedepth f4716ad

  • version: 1.30.4
Latest release: almost 2 years ago - 1,496 downloads - 548 dependencies
raghukirannavipoint/aldex2 mar23

  • version: 1.28.3
Latest release: over 2 years ago - 121 downloads - 1,548 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 1.24.1
Latest release: 5 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.32.5
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.24.1
Latest release: over 2 years ago - 20 downloads - 1,061 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 1.28.3
Latest release: almost 3 years ago - 22 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.20.1
Latest release: about 4 years ago - 110 downloads - 828 dependencies
ipbhalle/biobyte latest

  • version: 1.32.6
Latest release: over 2 years ago - 22 downloads - 1,311 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 1.30.0
Latest release: over 3 years ago - 74 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 1.28.2
Latest release: almost 4 years ago - 55 downloads - 327 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 1.22.0
Latest release: about 5 years ago - 59 downloads - 588 dependencies
js2264/fourdndata 1.1.0

  • version: 1.35.0
Latest release: over 2 years ago - 21 downloads - 1,273 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 1.32.4
Latest release: almost 3 years ago - 62 downloads - 699 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.32.0
Latest release: almost 3 years ago - 50 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 1.30.4
Latest release: about 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 1.20.1
Latest release: over 2 years ago - 21 downloads - 725 dependencies
koki/workflow 20210327

  • version: 1.24.1
Latest release: over 4 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 1.32.6
Latest release: over 1 year ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 1.32.4
Latest release: almost 3 years ago - 102 downloads - 1,163 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.28.3
Latest release: about 3 years ago - 215 downloads - 962 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.33.9
Latest release: almost 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.28.3
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 1.32.5
Latest release: about 2 years ago - 86 downloads - 386 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 1.8.1
Latest release: over 7 years ago - 193 downloads - 427 dependencies
omicschef/rnaseqchef v1.1.4

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.34.2
Latest release: 11 months ago - 1,365 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.29.2
Latest release: about 4 years ago - 44 downloads - 2,335 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.8.1
Latest release: over 7 years ago - 165 downloads - 572 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.8.1
Latest release: over 7 years ago - 172 downloads - 523 dependencies
chgyi/bio 3.5.1

  • version: 1.14.2
Latest release: about 7 years ago - 661 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.12.0
Latest release: almost 8 years ago - 159 downloads - 633 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 1.34.2
Latest release: 9 months ago - 907 downloads - 1,625 dependencies
prismcmap/normalization EPS005

  • version: 1.24.1
Latest release: 5 months ago - 1,176 downloads - 627 dependencies
koki/bindsc 20220609

  • version: 1.30.3
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
benolson/r_dada2_for_ris latest

  • version: 1.32.6
Latest release: over 2 years ago - 34 downloads - 657 dependencies
broadinstitute/pcawg_full 7

  • version: 1.10.1
Latest release: about 8 years ago - 420 downloads - 889 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.32.6
Latest release: almost 2 years ago - 390 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.24.1
Latest release: over 2 years ago - 302 downloads - 1,173 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.8.1
Latest release: over 7 years ago - 147 downloads - 453 dependencies
mfsentma/atacseq latest

  • version: 1.28.3
Latest release: over 2 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.32.6
Latest release: about 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.32.6
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.32.5
Latest release: over 2 years ago - 190 downloads - 752 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.16.6
Latest release: over 6 years ago - 360 downloads - 2,095 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.34.2
Latest release: over 2 years ago - 1,043 downloads - 784 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.35.1
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
chlazaris/dge_env 0.1

  • version: 1.28.3
Latest release: over 2 years ago - 16 downloads - 320 dependencies
alexthiery/archr 3.1

  • version: 1.28.3
Latest release: over 2 years ago - 202 downloads - 819 dependencies
cjchen/gxuclass 1.0

  • version: 1.34.2
Latest release: over 2 years ago - 19 downloads - 657 dependencies
cjchen/tbtoolszone 2.0

  • version: 1.28.3
Latest release: over 2 years ago - 141 downloads - 789 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.34.0
Latest release: over 2 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.34.2
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.32.5
Latest release: almost 3 years ago - 21 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.14.2
Latest release: almost 7 years ago - 233 downloads - 1,191 dependencies
yamaken37/common_factors_analysis 20230514

  • version: 1.30.4
Latest release: over 2 years ago - 21 downloads - 1,214 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.34.2
Latest release: about 2 years ago - 18 downloads - 1,422 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.32.6
Latest release: over 2 years ago - 54 downloads - 1,332 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 1.26.2
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 1.34.2
Latest release: over 1 year ago - 866 downloads - 1,350 dependencies
uvarc/rstudio tam5xe

  • version: 1.34.2
Latest release: about 2 years ago - 35 downloads - 1,062 dependencies
markshill/clustering_tree_building-env latest

  • version: 1.32.3
Latest release: about 3 years ago - 43 downloads - 1,416 dependencies
luisas/rde latest

  • version: 1.20.1
Latest release: almost 5 years ago - 47 downloads - 549 dependencies