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Package Usage : cran : BiocNeighbors

Explore the latest package usage data for BiocNeighbors in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 117
Total downloads: 118,848
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 1.16.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.12.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 1.20.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 1.16.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
weizhoujp/rchtc 4.3.0

  • version: 1.18.0
Latest release: over 2 years ago - 141 downloads - 738 dependencies
tariship/dev_sync_directories latest

  • version: 1.16.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.0.1
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 1.16.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
cheyne0328/rstudio zxy

  • version: 1.18.0
Latest release: over 2 years ago - 24 downloads - 775 dependencies
nathanprovin/cellcom 1.2.2

  • version: 1.18.0
Latest release: over 2 years ago - 189 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 1.14.0
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 1.12.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 1.16.0
Latest release: about 3 years ago - 75 downloads - 699 dependencies
koki/velocytor 20221015

  • version: 1.14.0
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.17.1
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
koki/bindsc 20220609

  • version: 1.14.0
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.8.2
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.16.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.19.0
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.16.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 1.10.0
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
luisas/rde latest

  • version: 1.4.2
Latest release: about 5 years ago - 66 downloads - 549 dependencies
jafoltz/sc_python 8

  • version: 1.12.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
andrewatmp/qiime_unzip latest

  • version: 1.16.0
Latest release: over 2 years ago - 151 downloads - 598 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 1.18.0
Latest release: over 2 years ago - 293 downloads - 529 dependencies
luisas/r_sc.simg latest

  • version: 1.4.2
Latest release: about 5 years ago - 21 downloads - 260 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 1.16.0
Latest release: 8 months ago - 2,648 downloads - 757 dependencies
gyusikhwang/tgs v1

  • version: 1.12.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
emersonchao/dsc180b latest

  • version: 1.16.0
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
tercen/normalise_cytof_operator 0.2.3

  • version: 1.14.0
Latest release: almost 2 years ago - 53 downloads - 655 dependencies
brusconi/seurat new

  • version: 1.18.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.16.0
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 1.18.0
Latest release: almost 2 years ago - 807 downloads - 853 dependencies
apollodorus/polyglot v1

  • version: 1.16.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
ucigenomics/cellchatnotebook 2.1.2

  • version: 1.16.0
Latest release: over 1 year ago - 36 downloads - 1,564 dependencies
nfancy/scflow 0.7.4

  • version: 1.16.0
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 1.16.0
Latest release: 3 months ago - 1,863 downloads - 3,823 dependencies
fluentin55/singlecell_docker 1.2

  • version: 1.16.0
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
crukmi/liana 0.1.9

  • version: 1.16.0
Latest release: almost 3 years ago - 34 downloads - 287 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.14.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
njjai/genebasis latest

  • version: 1.16.0
Latest release: over 2 years ago - 44 downloads - 789 dependencies
elynrfw/gerald-test latest

  • version: 1.16.0
Latest release: about 3 years ago - 38 downloads - 349 dependencies
compbiocore/dscov_sct 20221201

  • version: 1.16.0
Latest release: about 3 years ago - 44 downloads - 1,031 dependencies
sebimer/samba-v4-qiime2 2024.2

  • version: 1.16.0
Latest release: almost 2 years ago - 284 downloads - 583 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.14.0
Latest release: about 3 years ago - 73 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.16.0
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
repbioinfo/transformgampoi latest

  • version: 1.12.0
Latest release: about 2 years ago - 42 downloads - 1,664 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.16.0
Latest release: about 2 years ago - 155 downloads - 2,569 dependencies
jingxin/terrascpipe v0

  • version: 1.12.0
Latest release: almost 3 years ago - 141 downloads - 2,467 dependencies
fabianegli/scp-recommendations-2022 1.0

  • version: 1.16.0
Latest release: almost 3 years ago - 42 downloads - 1,328 dependencies
njjtemp/scrattch-mapping 4.2.0

  • version: 1.8.2
Latest release: almost 3 years ago - 794 downloads - 850 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 1.16.0
Latest release: over 2 years ago - 86 downloads - 1,158 dependencies
winuthayanon/rstudio 4.3.0

  • version: 1.18.0
Latest release: over 2 years ago - 166 downloads - 2,687 dependencies
crukmi/nas-app latest

  • version: 1.8.2
Latest release: about 3 years ago - 40 downloads - 701 dependencies
crukmi/liana_tensor2 0.1.9

  • version: 1.16.0
Latest release: almost 3 years ago - 21 downloads - 684 dependencies
madhu99/sb6 latest

  • version: 1.16.0
Latest release: about 3 years ago - 14 downloads - 666 dependencies
cgrlab/qiime2 2023.5

  • version: 1.16.0
Latest release: over 2 years ago - 84 downloads - 526 dependencies
jonasmrr/scrnaseq-pipeline latest

  • version: 1.16.0
Latest release: over 2 years ago - 55 downloads - 356 dependencies
btrspg/vscode-dkd-env latest

  • version: 1.12.0
Latest release: almost 3 years ago - 67 downloads - 1,182 dependencies
alleninst/arrow_scrattch_hmapping_on_hpc latest

  • version: 1.12.0
Latest release: almost 3 years ago - 81 downloads - 1,556 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.16.0
Latest release: over 2 years ago - 33 downloads - 1,568 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.8.2
Latest release: about 3 years ago - 89 downloads - 406 dependencies
felixschlesinger/assign_types v0.2

  • version: 1.12.0
Latest release: almost 3 years ago - 360 downloads - 503 dependencies
gaspardr/r-env test

My R environment for analyses and development

  • version: 1.16.0
Latest release: about 1 year ago - 370 downloads - 554 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.18.0
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
ucigenomics/spatiallibd latest

  • version: 1.16.0
Latest release: almost 3 years ago - 27 downloads - 2,006 dependencies
tercen/compensate_cytof_operator 0.0.7

  • version: 1.14.0
Latest release: about 3 years ago - 76 downloads - 1,643 dependencies
wyangwu/r4.1.2 latest

  • version: 1.12.0
Latest release: over 2 years ago - 93 downloads - 827 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.16.0
Latest release: over 2 years ago - 139 downloads - 3,115 dependencies
bioxfu/xseurat2 latest

  • version: 1.16.0
Latest release: almost 3 years ago - 79 downloads - 982 dependencies
wlc27/dcanr v1

  • version: 1.16.0
Latest release: almost 3 years ago - 94 downloads - 1,681 dependencies
tercen/tercen-studio-flowsuite 3.15-6

  • version: 1.14.0
Latest release: over 2 years ago - 130 downloads - 1,885 dependencies
robertplayer/scidap-genelists v5.0.0

  • version: 1.12.0
Latest release: over 1 year ago - 444 downloads - 609 dependencies
vidhyagnanasekaran/rocker-single-cell v1

  • version: 1.16.0
Latest release: almost 3 years ago - 36 downloads - 886 dependencies
bicore/scrattch_mapping 0.51

  • version: 1.16.0
Latest release: about 2 years ago - 960 downloads - 832 dependencies
cwong23/stx_env latest

Environment for spatial pipeline

  • version: 1.16.0
Latest release: over 2 years ago - 66 downloads - 1,606 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 1.16.0
Latest release: about 3 years ago - 41 downloads - 546 dependencies
luisas/r_sc latest

  • version: 1.4.2
Latest release: about 5 years ago - 23 downloads - 536 dependencies
gnwanne/decontx latest

  • version: 1.16.0
Latest release: about 3 years ago - 67 downloads - 938 dependencies
buddej/scshc 0.1.0

  • version: 1.18.0
Latest release: over 2 years ago - 22 downloads - 950 dependencies
weizhoujp/r-chtc-v1 latest

  • version: 1.18.0
Latest release: over 2 years ago - 5 downloads - 724 dependencies
daemontus/software-cell-oracle latest

  • version: 1.18.0
Latest release: over 2 years ago - 107 downloads - 1,013 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.18.0
Latest release: over 2 years ago - 18 downloads - 1,422 dependencies
louisk92/spapros_genebasis v1.0

  • version: 1.18.0
Latest release: over 2 years ago - 56 downloads - 1,419 dependencies
bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

  • version: 1.12.0
Latest release: 8 months ago - 52,691 downloads - 1,551 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 1.4.2
Latest release: about 5 years ago - 13 downloads - 1,153 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.11.0
Latest release: over 4 years ago - 3,692 downloads - 1,218 dependencies
denglab/vpfkit_base latest

  • version: 1.16.0
Latest release: almost 3 years ago - 26 downloads - 1,089 dependencies
cplaisier/ccafv2_extra latest

  • version: 1.16.0
Latest release: over 2 years ago - 33 downloads - 1,463 dependencies
porchard/decontx 20230104

  • version: 1.16.0
Latest release: about 3 years ago - 45 downloads - 830 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.16.0
Latest release: about 3 years ago - 97,191 downloads - 4,112 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.12.0
Latest release: almost 3 years ago - 485 downloads - 3,517 dependencies
bigomics/omicsplayground-base ub2204_v4

  • version: 1.12.0
Latest release: over 1 year ago - 1,636 downloads - 1,536 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 1.10.0
Latest release: over 2 years ago - 547 downloads - 924 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.14.0
Latest release: over 3 years ago - 120 downloads - 1,441 dependencies
tercen/debarcoding_cytof_operator 0.3.2

  • version: 1.14.0
Latest release: almost 2 years ago - 210 downloads - 1,659 dependencies
mbwali/jupyterlab qiime2023

  • version: 1.16.0
Latest release: over 2 years ago - 176 downloads - 1,941 dependencies