Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : ShortRead
Explore the latest package usage data for ShortRead in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 76
Total downloads: 150,021
More details on packages.ecosyste.ms - JSON
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 1.56.1, 1.52.0
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 1.44.3
mirekphd/ml-cpu-r36-rs-cust latest
- version: 1.36.0
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 1.40.0
mirekphd/ml-cpu-r36-base latest
- version: 1.36.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 1.36.0
dhspence/docker-sicer latest
- version: 1.38.0
dhspence/docker-basestation latest
- version: 1.38.0
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1
- version: 1.32.0
prismcmap/sushi develop
- version: 1.48.0
dhspence/docker-manta 1.5.0
- version: 1.38.0
mirekphd/ml-cpu-r35-rdp 20180918
- version: 1.38.0
tipsarin/rstudio 4.1.3viraltrack
- version: 1.52.0
dhspence/docker-vep 93
- version: 1.38.0
mbwali/jupyterlab qiime2023
- version: 1.56.0
mirekphd/ml-cpu-r36-rs 20200131
- version: 1.36.0
mattjmeier/r-odaf-hc-prod latest
- version: 1.56.0
weishwu/systempiper 12022022
- version: 1.54.0
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5
- version: 1.58.0
leepc12/test-jupyterhub v0.2.0
test-jupyterhub
- version: 1.56.1
prismcmap/base-clue-pseq latest
- version: 1.48.0
intelliseqngs/bioconductor r-coverage-stats_v0.1
- version: 1.44.0
sebrauschert/amplicon_pipeline v0.3.2
A pipeline for amplicon sequencing analysis of marine fish
- version: 1.58.0
mattjmeier/r-odaf-hc latest
Under Development. Containerized version of the R-ODAF Health Canada Pipeline.
- version: 1.56.0
gesiscss/binder-mortonjt-2dq2stats-2dworkshops-912d21 82c8b562545acab37a854f097c33806fa7c2a4b3
- version: 1.40.0
shiramaty/qiime2-sratools latest
- version: 1.52.0
mattjmeier/r-odaf-hc-base latest
- version: 1.56.0
sebimer/samba-v4-qiime2 2022.11
- version: 1.56.0
almahmoud/terra-jupyter bioc
- version: 1.54.0
emersonchao/dsc180b latest
- version: 1.56.0
ethill/qiime2 latest
docker container for qiime2
- version: 1.56.0
shashankti/bioc_docker v1
- version: 1.57.1
kumalpha/qiime2-core latest
- version: 1.48.0
ntobias85/abe_repo degust_build
- version: 1.42.0
madhu99/sb6 latest
- version: 1.56.1
shl198/rna_ppl latest
- version: 1.54.0
weishwu/diffbind 3.6.5
- version: 1.54.0
wlc27/dcanr v1
- version: 1.56.1
sharvaribatchx/dada2-filter-learn-errors latest
- version: 1.52.0
nucleoz/cnvplotr3 latest
- version: 1.36.1
benolson/r_dada2_for_ris latest
- version: 1.56.1
wesdorp/aws_dna latest
- version: 1.56.1
preethiilumina/diffbind 1.5
fixed genome name
- version: 1.56.1
gesiscss/binder-r2d-g5b5b759-natpombubpa-2damptk-5f1-2e5-2e4-904cbc b7b2357f6670556e582166033b738136fa103199
- version: 1.56.0
mapostolides/test12345 latest
- version: 1.44.1
jorgeamaya/dada2_terra_iseq v1
- version: 1.58.0
alesmaver/scramble2 latest
- version: 1.44.3
andrewatmp/testf latest
- version: 1.56.0
eppicenter/mad4hatter latest
- version: 1.58.0
commander121/rmarkdown latest
- version: 1.58.0
bac3/microbiome latest
16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.
- version: 1.56.0
fallingstar10/hbsigrocker latest
- version: 1.58.0
pipecraft/vsearch_dada2 0
- version: 1.58.0
lroser/databricksbio latest
- version: 1.58.0
globusgenomics/picrust 1.0
- version: 1.52.0
tariship/dev_sync_directories latest
- version: 1.56.1
andrewatmp/qiime_unzip latest
- version: 1.56.0
indraniel/chip-pipeline-annotation v1
- version: 1.56.1
alexsickler/open-pedcan latest
- version: 1.44.3
omicschef/epigenomechef v1.1.3
- version: 1.58.0
jlphillips/csci 2024-Spring
MTSU Department of Computer Science Stack
- version: 1.56.0
jorgeamaya/ci_barcode_terra_dada2_iseq v1
- version: 1.58.0
wyangwu/r4.1.2 latest
- version: 1.52.0
chunjiesamliu/scmocha latest
- version: 1.58.0
paulotaugc/16scan-metagenomics v2
- version: 1.52.0
bioedge/edge_24_1_ubuntu18 20231115
- version: 1.56.0
qdidiscoveryservices/diffbind latest
- version: 1.58.0
cgrlab/qiime2 2023.5
- version: 1.56.0
gesiscss/binder-r2d-g5b5b759-bassiousmaximus-2dbinder-2dr-2dgus-cfe967 f0376d46edceebca7d36de69b94f160a53a7ff78
- version: 1.48.0
ycli1995/bioinfo_dev 1.0.1
- version: 1.58.0
etretiakov/rocker-session latest
- version: 1.58.0
mfsentma/atacseq latest
- version: 1.52.0
omicsclass/metagenomics latest
- version: 1.52.0
robertplayer/scidap-qiime2 stable
- version: 1.56.0