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Package Usage : cran : genefilter

Explore the latest package usage data for genefilter in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 222
Total downloads: 530,663
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

biocorecrg/trax 0.2

  • version: 1.72.0
Latest release: over 2 years ago - 38 downloads - 296 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.78.0
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.74.1
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 1.72.1
Latest release: 11 months ago - 10,896 downloads - 633 dependencies
prismcmap/sushi v0.0.2

  • version: 1.72.1
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.78.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
andimajore/unpast_eval_container_asthma latest

  • version: 1.60.0
Latest release: over 2 years ago - 142 downloads - 486 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.60.0
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
hdsu/etbii2023 latest

  • version: 1.76.0
Latest release: about 3 years ago - 138 downloads - 358 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 1.72.1
Latest release: about 4 years ago - 116 downloads - 318 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.62.0
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.82.1
Latest release: over 2 years ago - 155 downloads - 679 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.76.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 1.72.1
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.80.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.72.1
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 1.78.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 1.76.0
Latest release: about 4 years ago - 61 downloads - 327 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 1.70.0
Latest release: about 5 years ago - 90 downloads - 588 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 1.62.0
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.80.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.81.0
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 1.80.0
Latest release: over 2 years ago - 86 downloads - 386 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.82.1
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.77.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.56.0
Latest release: over 7 years ago - 172 downloads - 523 dependencies
chgyi/bio 3.5.1

  • version: 1.62.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.60.0
Latest release: about 8 years ago - 166 downloads - 633 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 1.72.1
Latest release: 2 months ago - 1,341 downloads - 627 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.72.1
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
mfsentma/atacseq latest

  • version: 1.76.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
biocontainers/bioconductor-genefilter v1.56.0-1-deb_cv1

  • version: 1.56.0
Latest release: over 7 years ago - 153 downloads - 428 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.64.0
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
chlazaris/dge_env 0.1

  • version: 1.76.0
Latest release: over 2 years ago - 17 downloads - 320 dependencies
cjchen/tbtoolszone 2.0

  • version: 1.76.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.82.1
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.62.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 1.74.1
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
qdidiscoveryservices/flowr 1.0

  • version: 1.78.0
Latest release: over 3 years ago - 173 downloads - 1,476 dependencies
luisas/rde latest

  • version: 1.68.0
Latest release: about 5 years ago - 66 downloads - 549 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 1.68.0
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.72.1
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 1.76.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.80.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
prismcmap/qc EPS005

  • version: 1.72.1
Latest release: 6 months ago - 739 downloads - 245 dependencies
luisas/r_sc.simg latest

  • version: 1.68.0
Latest release: about 5 years ago - 21 downloads - 260 dependencies
prismcmap/lfc 0.0.1

  • version: 1.72.1
Latest release: over 2 years ago - 1,066 downloads - 245 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.72.1
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
prismcmap/batch_correction APS005

  • version: 1.72.1
Latest release: 4 months ago - 956 downloads - 245 dependencies
gyusikhwang/tgs v1

  • version: 1.76.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 1.68.0
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
andimajore/unpast_eval_container_bc latest

  • version: 1.60.0
Latest release: over 2 years ago - 76 downloads - 486 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.68.0
Latest release: over 5 years ago - 10 downloads - 431 dependencies
prismcmap/compound_summary APS005

  • version: 1.72.1
Latest release: 4 months ago - 675 downloads - 627 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 1.72.1
Latest release: over 1 year ago - 68 downloads - 421 dependencies
evafastpf/commot 0.1

  • version: 1.68.0
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.80.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.81.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 1.82.1
Latest release: over 1 year ago - 146 downloads - 536 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.82.1
Latest release: over 2 years ago - 26 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.80.3
Latest release: about 3 years ago - 32 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.78.0
Latest release: about 3 years ago - 33 downloads - 341 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.82.1
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.76.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 1.72.0
Latest release: over 1 year ago - 620 downloads - 1,112 dependencies
msgao/deseq2 latest

  • version: 1.76.0
Latest release: about 3 years ago - 26 downloads - 384 dependencies
mhettich0years/r-images v1.1.2

  • version: 1.80.2
Latest release: about 3 years ago - 143 downloads - 334 dependencies
bixbeta/pavian v1

  • version: 1.72.1
Latest release: about 3 years ago - 23 downloads - 388 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.80.0
Latest release: over 2 years ago - 76 downloads - 506 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.78.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.76.0
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
bianca7/deseq2 latest

  • version: 1.80.3
Latest release: over 2 years ago - 40 downloads - 1,263 dependencies
luisas/rdeanalysis latest

  • version: 1.68.0
Latest release: over 5 years ago - 72 downloads - 508 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.68.0
Latest release: about 6 years ago - 16 downloads - 2,128 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.78.0
Latest release: about 3 years ago - 74 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.80.3
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.64.0
Latest release: about 2 years ago - 155 downloads - 2,569 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.80.2
Latest release: about 3 years ago - 40 downloads - 1,604 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.82.1, 1.80.3
Latest release: about 2 years ago - 110 downloads - 1,150 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.75.1
Latest release: about 4 years ago - 200 downloads - 2,087 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 1.78.0
Latest release: almost 3 years ago - 86 downloads - 953 dependencies
digitalproteomes/mh_class 2023

  • version: 1.76.0
Latest release: over 2 years ago - 82 downloads - 3,939 dependencies
phenomedb/phenomedb-airflow latest

  • version: 1.80.3
Latest release: almost 3 years ago - 65 downloads - 1,310 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 1.80.0
Latest release: over 2 years ago - 67 downloads - 1,319 dependencies
markataylor/r_yufree v1.0.0

  • version: 1.80.0
Latest release: almost 3 years ago - 34 downloads - 1,514 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.68.0
Latest release: over 3 years ago - 55,549 downloads - 352 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.76.0
Latest release: almost 3 years ago - 9 downloads - 1,347 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.76.0
Latest release: about 3 years ago - 115 downloads - 1,382 dependencies
singha53/modc v0.1

  • version: 1.76.0
Latest release: over 2 years ago - 35 downloads - 783 dependencies
madhu99/sb6 latest

  • version: 1.80.1
Latest release: about 3 years ago - 14 downloads - 666 dependencies
shl198/rna_ppl latest

  • version: 1.78.0
Latest release: almost 3 years ago - 24 downloads - 2,099 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.80.3
Latest release: over 2 years ago - 42 downloads - 1,720 dependencies
btrspg/vscode-dkd-env latest

  • version: 1.76.0
Latest release: almost 3 years ago - 67 downloads - 1,182 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 1.78.0
Latest release: almost 3 years ago - 35 downloads - 1,454 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.80.3
Latest release: over 2 years ago - 33 downloads - 1,568 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.72.1
Latest release: about 3 years ago - 89 downloads - 406 dependencies
vegesnam/metaboanalyst 6thnov2024

  • version: 1.80.3
Latest release: about 1 year ago - 246 downloads - 358 dependencies