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Package Usage : cran : Seurat

Explore the latest package usage data for Seurat in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 187
Total downloads: 158,929
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 4.3.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 5.0.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
ocdr/ds-apps 1.0.43

  • version: 4.4.0
Latest release: about 2 years ago - 3,932 downloads - 3,778 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 4.3.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
vanessa/seurat latest

  • version: 2.3.3
Latest release: over 7 years ago - 58 downloads - 475 dependencies
mlepetit/ranalysis 3.3.4

  • version: 4.0.4
Latest release: about 3 years ago - 362 downloads - 2,131 dependencies
gnwanne/atac latest

  • version: 4.3.0
Latest release: about 3 years ago - 35 downloads - 688 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 4.3.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
tariship/dev_sync_directories latest

  • version: 4.3.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 4.3.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
cheyne0328/rstudio zxy

  • version: 4.3.0
Latest release: over 2 years ago - 24 downloads - 775 dependencies
nathanprovin/cellcom 1.2.2

  • version: 4.3.0.1
Latest release: over 2 years ago - 189 downloads - 596 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 4.3.0.1
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
rgregstacey/seurat_image 2.1

  • version: 4.3.0
Latest release: almost 3 years ago - 113 downloads - 547 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 4.3.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 4.3.0
Latest release: about 3 years ago - 75 downloads - 699 dependencies
tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

  • version: 4.1.0
Latest release: almost 4 years ago - 74 downloads - 1,312 dependencies
koki/velocytor 20221015

  • version: 4.2.0
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 4.1.1
Latest release: about 3 years ago - 40 downloads - 926 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 4.3.0
Latest release: almost 3 years ago - 60 downloads - 2,274 dependencies
koki/bindsc 20220609

  • version: 4.1.1
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
uabbds/zebrafish_telencephalon_atlas_app 1.0.0

  • version: 4.9.9.9058
Latest release: over 2 years ago - 330 downloads - 1,409 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 4.0.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
alexthiery/archr 3.1

  • version: 4.3.0.1, 4.3.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 4.3.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 4.3.0
Latest release: over 2 years ago - 18 downloads - 1,422 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 4.0.5
Latest release: over 2 years ago - 389 downloads - 1,494 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 4.0.4
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 4.3.0
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
luisas/rde latest

  • version: 3.2.2
Latest release: about 5 years ago - 66 downloads - 549 dependencies
uvarc/rstudio tam5xe

  • version: 4.3.0.1
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 4.3.0
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies
jafoltz/sc_python 8

  • version: 4.3.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 4.9.9.9059, 4.3.0
Latest release: over 2 years ago - 293 downloads - 529 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 4.3.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 3.2.2
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dpraveen511/spot spot_ec2

  • version: 4.3.0.1
Latest release: over 2 years ago - 220 downloads - 287 dependencies
stefanucciluca/tregopathies latest

  • version: 4.3.0.1
Latest release: over 2 years ago - 91 downloads - 488 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 4.9.9.9058
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 4.0.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
gyusikhwang/tgs v1

  • version: 4.1.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
granatumx/gbox-cellid-sctype 1.0.2

  • version: 4.3.0
Latest release: over 2 years ago - 91 downloads - 201 dependencies
mshriver01/share_task_archr latest

  • version: 4.3.0
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 4.0.0
Latest release: over 1 year ago - 68 downloads - 421 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 4.3.0
Latest release: over 2 years ago - 158 downloads - 316 dependencies
mikesiwenwu/eversus_benchmarking v7_s3test

  • version: 4.3.0.1
Latest release: over 2 years ago - 158 downloads - 579 dependencies
brusconi/seurat new

  • version: 4.9.9.9045
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 4.3.0
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
lizzyr/pseudo_ko 1.0.3

  • version: 4.3.0.1, 4.3.0
Latest release: over 2 years ago - 40 downloads - 379 dependencies
apollodorus/polyglot v1

  • version: 4.3.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
ucigenomics/cellchatnotebook 2.1.2

  • version: 4.3.0
Latest release: over 1 year ago - 36 downloads - 1,564 dependencies
nfancy/scflow 0.7.4

  • version: 4.3.0
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 3.2.3
Latest release: over 1 year ago - 620 downloads - 1,112 dependencies
payne6861/seurat v1.0.0

  • version: 4.3.0
Latest release: about 3 years ago - 17 downloads - 1,862 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 4.9.9.9049
Latest release: over 2 years ago - 142 downloads - 441 dependencies
bixbeta/pavian v1

  • version: 4.0.0
Latest release: about 3 years ago - 23 downloads - 388 dependencies
zwcdocker/seurat latest

  • version: 4.0.4
Latest release: about 3 years ago - 23 downloads - 655 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 4.3.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
andrewsg/archr dev

  • version: 4.3.0.1
Latest release: almost 2 years ago - 173 downloads - 1,356 dependencies
sheddn/bioinformatics-tools latest

  • version: 4.3.0
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
chiajungl/scrna 4.4.0-4.4

  • version: 4.3.0
Latest release: over 1 year ago - 135 downloads - 1,312 dependencies
compbiocore/dscov_sct 20221201

  • version: 4.3.0
Latest release: about 3 years ago - 44 downloads - 1,031 dependencies
etretiakov/rocker-session latest

  • version: 4.3.0
Latest release: over 2 years ago - 78 downloads - 2,565 dependencies
luisas/rdeanalysis latest

  • version: 3.1.5
Latest release: over 5 years ago - 72 downloads - 508 dependencies
almahmoud/terra-jupyter bioc

  • version: 4.3.0
Latest release: about 3 years ago - 74 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 4.3.0
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
jingxin/terrascpipe v0

  • version: 4.3.0
Latest release: about 3 years ago - 141 downloads - 2,467 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 4.0.5
Latest release: over 4 years ago - 200 downloads - 2,087 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 4.2.0
Latest release: almost 3 years ago - 86 downloads - 953 dependencies
viascientific/rstudio-app-isee 1.0

  • version: 4.0.1
Latest release: almost 3 years ago - 82 downloads - 897 dependencies
njjtemp/scrattch-mapping 4.2.0

  • version: 4.1.0.9003
Latest release: almost 3 years ago - 794 downloads - 850 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 4.3.0.1
Latest release: over 2 years ago - 86 downloads - 1,158 dependencies
dantingz/seurat 1.0.2

  • version: 3.1.1
Latest release: over 2 years ago - 120 downloads - 915 dependencies
winuthayanon/rstudio 4.3.0

  • version: 4.3.0.1
Latest release: over 2 years ago - 166 downloads - 2,687 dependencies
abelhj/rstudio 4.2.3

  • version: 4.3.0
Latest release: almost 3 years ago - 56 downloads - 800 dependencies
dabbleofdevops/r-datascience 4.2.2

  • version: 4.3.0
Latest release: almost 3 years ago - 156 downloads - 816 dependencies
crukmi/nas-app latest

  • version: 4.3.0
Latest release: about 3 years ago - 40 downloads - 701 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 4.3.0
Latest release: about 3 years ago - 15 downloads - 1,616 dependencies
shl198/rna_ppl latest

  • version: 4.1.1
Latest release: almost 3 years ago - 24 downloads - 2,099 dependencies
btrspg/vscode-dkd-env latest

  • version: 4.3.0
Latest release: almost 3 years ago - 67 downloads - 1,182 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 4.1.1
Latest release: almost 3 years ago - 35 downloads - 1,454 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 4.3.0
Latest release: over 2 years ago - 34 downloads - 1,568 dependencies
gcriogooglesamples/rethinking v2

  • version: 4.1.1
Latest release: about 3 years ago - 136 downloads - 3,299 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 4.0.1
Latest release: about 3 years ago - 89 downloads - 406 dependencies
felixschlesinger/assign_types v0.2

  • version: 4.3.0
Latest release: almost 3 years ago - 360 downloads - 503 dependencies
gaspardr/r-env test

My R environment for analyses and development

  • version: 4.3.0
Latest release: about 1 year ago - 370 downloads - 554 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 4.9.9.9059
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
cjagla/seurat_shiny latest

  • version: 4.3.0
Latest release: almost 3 years ago - 40 downloads - 949 dependencies
brianyee/celligrate 55ba642

  • version: 4.3.0
Latest release: about 3 years ago - 20 downloads - 2,522 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 4.3.0.1
Latest release: over 2 years ago - 78 downloads - 1,444 dependencies
ucigenomics/spatiallibd latest

  • version: 4.3.0
Latest release: about 3 years ago - 27 downloads - 2,006 dependencies
dnbelabc4/dnbc4dev 2.1.2

  • version: 4.3.0
Latest release: over 1 year ago - 258 downloads - 1,159 dependencies
wyangwu/r4.1.2 latest

  • version: 5.0.1
Latest release: over 2 years ago - 93 downloads - 827 dependencies
luisas/rfasta latest

  • version: 3.2.1
Latest release: over 5 years ago - 28 downloads - 501 dependencies
chiajungl/verse-seurat 4.0.2-4.3

  • version: 4.3.0
Latest release: over 2 years ago - 21 downloads - 1,121 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 4.3.0
Latest release: over 2 years ago - 139 downloads - 3,115 dependencies