jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

rocker/tidyverse 4.3.2

Version-stable build of R, rstudio, and R packages

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

rocker/verse 4.3.2

Adds tex & related publishing packages to version-locked tidyverse image

rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

rocker/shiny-verse 4.3.2

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

veupathdb/rserve 7

ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

ashish1981/x86-r-z-appln latest

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

broadinstitute/terra-jupyter-aou 8bf6b13

ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

rocker/ropensci latest

broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

rocker/ml 4.3.2

Docker images with R + GPU support for machine learning libraries

ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq dev

A docker image for nf-core/chipseq

180a51c0/gh-action-buildapp latest

dhspence/docker-basespace_chromoseq latest

rocker/r-parallel 1.0.1

rocker/ml-verse 4.3.2

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

ashish1981/zreferenceimplementation d17052022

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

vanallenlab/sv-pipeline filter_gt_029fa3b

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

artemklevtsov/r-alpine pkgdev

R docker images based on the alpine:latest

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 27

mesosphere/mesosphere-data-toolkit latest

biocontainers/isee-galaxy v3.13_cv1.0.0

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v1.1.1-tiji-test

ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

patroonorg/patroondeps latest

gesiscss/binder-gesiscss-2dsmm-5fdemo-236470 dfd722278551f17b42f226ab5a196b2b4c58e298

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

ashish1981/x86-rbase-shiny-plumber d300422

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

broadinstitute/terra-jupyter-gatk 8444561

mesosphere/mesosphere-jupyter-service latest

nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

dhspence/docker-biscuit latest

databrewllc/odk-form-extraction 3ffdc02

araalinetworks/devproxy master--jenkins--2023-08-11-07-57-01

ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

rapporteket/dev main

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

tercen/dartrusttidy travis-17

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dceoy/r-tidyverse latest

R with tidyverse

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

gesiscss/binder-lmartinoty-2dlmartinoty-e3b0bd c626ad4bba1c566a8af5d745f4386d02e9fe9b44

tercen/runtime-r40 4.0.4-6

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

nfcore/slamseq dev

A docker image for nf-core/slamseq

intelliseqngs/task_bam-filter-mismatch 1.4.1

prismcmap/reports 94804f34cf31

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

intelliseqngs/task_bam-metrics 1.2.8

nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.