jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

coala/base pre

A simple docker image featuring coala and it's dependencies.

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

nfcore/rnaseq dev

Docker Image for nf-core/rnaseq project.

veupathdb/rserve 7

broadinstitute/viral-core latest

ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

broadinstitute/terra-jupyter-aou 8bf6b13

ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

rocker/ropensci latest

broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

biocontainers/control-freec v11.5_cv1

nfcore/chipseq dev

A docker image for nf-core/chipseq

180a51c0/gh-action-buildapp latest

dit4c/dit4c-container-jupyterlab latest

DIT4C container for Jupyter Lab

dhspence/docker-basespace_chromoseq latest

nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

dit4c/dit4c-container-jupyter latest

broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

vanallenlab/sv-pipeline filter_gt_029fa3b

nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/murasaki v1.68.6-8b1-deb_cv1

biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

biocontainers/murasaki-common v1.68.6-8-deb_cv1

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 27

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

kbase/kbase sdkbase.latest

biocontainers/isee-galaxy v3.13_cv1.0.0

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

alligatorcompany/acs-exasol 8.23.0.1

exasol docker image with additional checks

dhspence/docker-biscuit latest

araalinetworks/devproxy master--jenkins--2023-08-11-07-57-01

dragonflyscience/niwaverse 2020-08-11

ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dragonflyscience/dragonverse-18.04 latest

nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

nfcore/airrflowreport dev

dragonflyscience/sharknado 2023-07-23

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

nfcore/slamseq dev

A docker image for nf-core/slamseq

intelliseqngs/task_bam-filter-mismatch 1.4.1

nfcore/hic dev

A docker container for the nf-core/hic pipeline.

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

intelliseqngs/task_bam-metrics 1.2.8