Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : DESeq2
Explore the latest package usage data for DESeq2 in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 206
Total downloads: 956,398
More details on packages.ecosyste.ms - JSON
veupathdb/rserve 7
- version: 1.38.3
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 1.38.1
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 1.26.0
nfcore/chipseq dev
A docker image for nf-core/chipseq
- version: 1.28.0
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 1.40.2
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 1.26.0
mirekphd/ml-cpu-r36-rs-cust latest
- version: 1.18.1
mirekphd/ml-cpu-r36-base latest
- version: 1.18.1
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.
- version: 1.26.0
nfcore/slamseq dev
A docker image for nf-core/slamseq
- version: 1.22.1
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 1.30.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 1.20.0
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 1.20.0
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 1.20.0
dhspence/docker-sicer latest
- version: 1.20.0
qdidiscoveryservices/limma-voom 4.2.0
- version: 1.36.0
dhspence/docker-basestation latest
- version: 1.20.0
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 1.28.1
koki/sctensor-experiments 20220208
- version: 1.34.0
evolbioinfo/deseq2 v1.28.1
- version: 1.28.1
qdidiscoveryservices/scrna_downstream 1.1
- version: 1.32.0
anand7899/rmarkdown latest
- version: 1.38.0
chgyi/bio 3.5.1
- version: 1.20.0
canaantt/notitia-ocpu latest
This is part of zager/notitia.
- version: 1.18.1
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1
- version: 1.14.1
chgyi/metaware_rna_denovo latest
- version: 1.22.2
dhspence/docker-manta 1.5.0
- version: 1.20.0
atttilacs/seurat_big latest
- version: 1.34.0
mirekphd/ml-cpu-r35-rdp 20180918
- version: 1.20.0
jafoltz/scclassify latest
- version: 1.34.0
mlepetit/ranalysis 3.3.4
- version: 1.32.0
hdsu/etbii2023 latest
- version: 1.34.0
millerh1/ste v1.0
- version: 1.38.0
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520
- version: 1.26.0
lorentzb/gene8940_r 1.0
- version: 1.38.1
dhspence/docker-vep 93
- version: 1.20.0
doejgi/trinityrnaseq-wdl 2.11.0b
- version: 1.38.1, 1.26.0
qdidiscoveryservices/batch_correction latest
- version: 1.28.1
koki/tensor-projects-parasite 20220819
- version: 1.36.0
mirekphd/ml-cpu-r36-rs 20200131
- version: 1.18.1
bryanfisk/capybara latest
- version: 1.34.0
qdidiscoveryservices/glimma 4.2.0
- version: 1.36.0
chriswyatt/svm1071deseq2limma latest
- version: 1.34.0
mattjmeier/r-odaf-hc-prod latest
- version: 1.38.0
luisas/rdeanalysis latest
- version: 1.26.0
sagnikbanerjee15/ngpint 1.0.0
- version: 1.35.0
prangannath/rna_seq latest
Container for EvolOMICS RNA_Seq pipeline
- version: 1.34.0
mlepetit/rnormalisation 1.0
- version: 1.32.0
luisas/rde latest
- version: 1.26.0
sheddn/bioinformatics-tools latest
- version: 1.34.0
weishwu/systempiper 12022022
- version: 1.36.0
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5
- version: 1.40.2
koki/urchin_workflow_r 20220531
- version: 1.36.0
luisas/r_sc latest
- version: 1.26.0
froeuhouais/r_image latest
R image with DESeq2
- version: 1.38.1
yiluxiangbei/pumpkin-genomealign-notebook 1.0
- version: 1.34.0
yiluxiangbei/pumpkin-gene-genomealign 20220216
- version: 1.34.0
delaugustin/r-desqeq2 v4.2
- version: 1.34.0
entsupml/r-with-libraries latest
- version: 1.38.2
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest
- version: 1.26.0
chgyi/trinity 2.8.4
- version: 1.18.1
sebeclemence/deseq2 v1.38.1
- version: 1.38.1
qdidiscoveryservices/sc_pip_r_and_py latest
- version: 1.30.0
evolomicsmbbt/rna_seq latest
- version: 1.34.0
viascientific/rstudio-app 1.0
- version: 1.38.3
mattjmeier/r-odaf-hc latest
Under Development. Containerized version of the R-ODAF Health Canada Pipeline.
- version: 1.38.0
luisas/r_sc.simg latest
- version: 1.26.0
qdidiscoveryservices/seurat_tidyverse latest
- version: 1.30.1
abelean/seurat_azimuth 5b
- version: 1.34.0
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest
- version: 1.26.0
edkang0925/diffutr latest
- version: 1.38.3
bakeronit/rstudio_hpc_cancer 0.1.3
rocker-rstudio with some R packages installed in cancer genomic analysis
- version: 1.40.2
mattjmeier/r-odaf-hc-base latest
- version: 1.38.0
stormgod/deepmaps-cpu latest
- version: 1.38.3
sameetmehta/docker_report_apptainer devel
- version: 1.40.1
qdidiscoveryservices/pseudobulk 1.1
- version: 1.30.0
tamaraperteghella/r4_hormonit latest
- version: 1.34.0
msgao/deseq2 latest
- version: 1.34.0
almahmoud/terra-jupyter bioc
- version: 1.36.0
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest
- version: 1.30.1
bixbeta/cluster_profiler v1
- version: 1.30.0
daltoncp/rstudio_celeganssinglecell 4.2_12
- version: 1.40.2
chaunceyzhou/awesome_rnaseq v1.3
- version: 1.26.0
dsouzd04/himc_zellkonverter 1.6.5
- version: 1.36.0
codechenx/mice_aspergillus_infection_lung_project latest
- version: 1.38.3
alexeymakhonin/bioinf-2022-notebook latest
- version: 1.38.2
alkoenig08/harmonyseurat latest
Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.
- version: 1.38.3
andyvs/testimage 3.0
- version: 1.38.0
viascientific/deseq2-docker 2.0
- version: 1.38.3, 1.38.0
apollodorus/genentech-jp v1
- version: 1.34.0
bixbeta/pavian v1
- version: 1.30.0
shashankti/bioc_docker v1
- version: 1.39.5
compbiocore/dscov_sct 20221201
- version: 1.38.1
yosuketanigawa/rocker-geospatial-seurat latest
Docker image of Seurat installed on R Studio
- version: 1.36.0