btrspg/r-env cache

biocorecrg/trax 0.2

koki/tensor-projects-parasite 20220819

mlepetit/ranalysis 3.3.4

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

hdsu/etbii2023 latest

cheyne0328/rstudio zxy

nciccbr/ccbr_r_4.3.0 v1

sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

evolomicsmbbt/rna_seq latest

matzieb/shiny-4.0.3-seurat4-spatial latest

qdidiscoveryservices/glimma 4.2.0

chriswyatt/svm1071deseq2limma latest

mattjmeier/r-odaf-hc-prod latest

qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

sagnikbanerjee15/ngpint 1.0.0

biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

chgyi/bio 3.5.1

canaantt/notitia-ocpu latest

This is part of zager/notitia.

commander121/rmarkdown 4.4.0d-b4

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mfsentma/atacseq latest

chgyi/metaware_rna_denovo latest

chlazaris/dge_env 0.1

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

dhspence/docker-manta 1.5.0

mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

alenaerts/deseq2 v1

nciccbr/ccbr_fraser_1.10.2 latest

mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

daltoncp/rstudio_celeganssinglecell 4.2_12

luisas/r_sc.simg latest

dhspence/docker-rstudio-python latest

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

gyusikhwang/tgs v1

alexsickler/open-pedcan latest

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

mattjmeier/r-odaf-hc-base latest

stormgod/deepmaps-cpu latest

sameetmehta/docker_report_apptainer devel

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

omicschef/epigenomechef v1.1.5

brianyee/rnaseq snakemake_1.0.0

qdidiscoveryservices/pseudobulk 2.0.2

msgao/deseq2 latest

mfilipuz/r_v423 23.05.09

bixbeta/pavian v1

fgualdr/env_norm_gr_idr latest

yosuketanigawa/rstudio_yt latest

sheddn/bioinformatics-tools latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

bianca7/deseq2 latest

luisas/rdeanalysis latest

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3

compbiocore/lee_isg_erv 20230306

jenfisher7/rstudio_sbae latest

bioedge/edge_24_1_ubuntu18 20231115

bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

dsouzd04/himc_zellkonverter 1.6.5

qdidiscoveryservices/diffbind latest

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

winuthayanon/rstudio 4.3.0

prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

danhumassmed/de-seq-tools 1.0.2

Software for Bioinformatics pipelines HOMER, DESeq2, samtools, edgeR, rclone

shl198/rna_ppl latest

btrspg/vscode-dkd-env latest

bicore/gcs_10x_rnaseq_qc 4.2.0

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

lesbiangreat/bioinfor_dev v0.64

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

gaspardr/r-env test

My R environment for analyses and development

mfsentma/rna latest

gesiscss/binder-r2d-g5b5b759-bassiousmaximus-2dbinder-2dr-2dgus-cfe967 f0376d46edceebca7d36de69b94f160a53a7ff78

ycli1995/bioinfo_dev 1.1.0

arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

chaunceyzhou/awesome_rnaseq v2.0

wyangwu/r4.1.2 latest

weishwu/diffbind 3.6.5

viascientific/deseq2-docker 2.0

compbiocore/jupyterhub-docker-images-jh_image 20230524

dongminshin/sc_ppl 1.71

wlc27/dcanr v1

chiajungl/seurat 4.4.0-4.4

apollodorus/genentech-jp v1

koji11235/rnaseq_env latest

preethiilumina/diffbind 1.5.1

fixed genome name