rocker/geospatial 4.4.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

veupathdb/rserve 8.2.2

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

broadinstitute/terra-jupyter-aou 2.1.13

ccdlstaging/dr_affymetrix 1.45.8

rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

rocker/ropensci 3.4.1

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

biocontainers/control-freec v11.5_cv1

nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

180a51c0/gh-action-buildapp latest

dhspence/docker-basespace_chromoseq latest

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

rocker/ml-verse 4.4.1

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

biocontainers/isee-galaxy v3.13_cv1.0.0

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-tf-cpu v2.0.0

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

alligatorcompany/acs-exasol 1.0.5

exasol docker image with additional checks

dragonflyscience/niwaverse 2020-08-11

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

ocdr/dkube-datascience-rs-tf-gpu v2.0.0

dragonflyscience/sharknado 2024-06-10

biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

nfcore/hic 1.3.0

A docker container for the nf-core/hic pipeline.

nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

intelliseqngs/task_vcf-uniq 1.0.0

mirekphd/ml-cpu-r35-rs 20190201

lucifer001/custom-rs-tf-multiuser gpu

veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

prismcmap/depmap_versions v0.1.0

dhspence/docker-homer latest

docker with chip-seq tool homer

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

tercen/runtime-r35 3.5.3-7

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

ctomlins/mblast latest

dragonflyscience/shellington 2021-09-14

dragonflyscience/wfm-reports-20.04 2022-10-14

afcai2c/r-shiny pc22

R Shiniy - Build interactive web applications that can execute R code

rocker/gdal latest

Build gdal separately to avoid timeouts

prismcmap/drc-module v0.0.1

veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

dhspence/docker-sicer latest

qdidiscoveryservices/limma-voom 4.2.0

tercen/operator_base 1.0.5

prismcmap/norm-module v0.0.1

dragonflyscience/dragonforest-20.04 20220711_1155

nuest/ten-simple-rules-dockerfiles latest

vanallenlab/sv-pipeline-qc gnomad_v3_qc

datalabauth/covid19 latest

Webapp for visualizing COVID-19 data

dhspence/docker-basestation latest

qdidiscoveryservices/py3_cellranger 6.1.2

ocdr/dkube-datascience-rs-sk-cpu 0.23.2

nuest/rockerverse-paper latest

veitveit/complexbrowser release-1.6

dragonflyscience/kakapodock 2024-07-15

rapporteket/rap-dev-data nodata

Tailor-made

mirekphd/ml-cpu-r35-jnb devel_2b2752c

dhspence/docker-dss latest

tercen/flowsom 0.2.3

rapporteket/rap-dev latest

biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

biocontainers/bioconductor-biomart v2.30.0-1-deb_cv1

nuest/rocker-lightgbm latest

A rocker/verse images with Microsoft's LightGBM