Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : XML

Explore the latest package usage data for XML in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 839
Total downloads: 4,148,799

More details on packages.ecosyste.ms - JSON

rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

  • version: 3.99-0.16, 3.99-0.14
Latest release: about 1 year ago - 744,200 downloads - 1,336 dependencies
veupathdb/rserve 7

  • version: 3.99-0.13
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 3.98-1.5
Latest release: almost 8 years ago - 115,438 downloads - 884 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 3.99-0.13
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 3.98-1.10
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 3.99-0.16, 3.99-0.14
Latest release: about 1 year ago - 95,871 downloads - 2,239 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 3.99-0.6
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
rocker/ropensci latest

  • version: 3.98-1.11
Latest release: over 6 years ago - 88,618 downloads - 1,589 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 3.99-0.3
Latest release: almost 2 years ago - 88,219 downloads - 1,101 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 3.99-0.3
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 3.98-1.3
Latest release: almost 5 years ago - 52,130 downloads - 432 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 3.99-0.6
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
180a51c0/gh-action-buildapp latest

  • version: 3.99-0.3
Latest release: over 4 years ago - 48,804 downloads - 1,987 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 3.98-1.20
Latest release: over 5 years ago - 38,314 downloads - 559 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 3.99-0.9
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
rocker/ml-verse 4.3.2

  • version: 3.99-0.16, 3.99-0.14
Latest release: 11 months ago - 34,310 downloads - 1,414 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 3.99-0.14
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 3.99-0.3
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 3.99-0.3
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

  • version: 3.99-0.3
Latest release: over 1 year ago - 13,462 downloads - 747 dependencies
rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

  • version: 3.98-1.20
Latest release: almost 5 years ago - 12,227 downloads - 534 dependencies
biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

  • version: 3.98-1.17
Latest release: over 5 years ago - 9,305 downloads - 689 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 3.99-0.3
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

  • version: 3.99-0.3
Latest release: about 3 years ago - 5,800 downloads - 2,008 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 3.99-0.6
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 3.98-1.20
Latest release: almost 5 years ago - 3,524 downloads - 843 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 3.99-0.5
Latest release: almost 4 years ago - 3,040 downloads - 1,044 dependencies
ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

  • version: 3.99-0.3
Latest release: over 2 years ago - 3,001 downloads - 722 dependencies
ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

  • version: 3.99-0.3
Latest release: over 1 year ago - 3,150 downloads - 747 dependencies
patroonorg/patroondeps latest

  • version: 3.99-0.13
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

  • version: 3.99-0.3
Latest release: over 1 year ago - 2,777 downloads - 841 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 3.98-1.20
Latest release: almost 5 years ago - 2,657 downloads - 591 dependencies
gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

  • version: 3.99-0.3
Latest release: about 4 years ago - 2,479 downloads - 2,536 dependencies
bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

  • version: 3.99-0.6
Latest release: over 3 years ago - 2,533 downloads - 1,920 dependencies
alligatorcompany/acs-exasol 8.23.0.1

exasol docker image with additional checks

  • version: 3.99-0.8
Latest release: about 1 year ago - 2,029 downloads - 2,085 dependencies
dragonflyscience/niwaverse 2020-08-11

  • version: 3.99-0.3
Latest release: over 4 years ago - 1,787 downloads - 1,445 dependencies
rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

  • version: 3.98-1.20
Latest release: almost 5 years ago - 1,775 downloads - 581 dependencies
dragonflyscience/dragonverse-18.04 latest

  • version: 3.99-0.6
Latest release: over 2 years ago - 1,227 downloads - 1,440 dependencies
afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

  • version: 3.99-0.10
Latest release: almost 2 years ago - 1,131 downloads - 702 dependencies
ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

  • version: 3.99-0.3
Latest release: over 2 years ago - 1,025 downloads - 1,011 dependencies
dragonflyscience/sharknado 2023-07-23

  • version: 3.99-0.9
Latest release: over 1 year ago - 1,298 downloads - 2,516 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: 3.98-1.9
Latest release: over 6 years ago - 957 downloads - 366 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 3.99-0.3
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
afcai2c/python-r-ai latest

Image with Python and R packages

  • version: 3.99-0.10
Latest release: over 2 years ago - 851 downloads - 851 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 3.99-0.6
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: 3.99-0.3
Latest release: over 3 years ago - 25,614 downloads - 354 dependencies
nfcore/hic dev

A docker container for the nf-core/hic pipeline.

  • version: 3.99-0.6
Latest release: about 3 years ago - 15,244 downloads - 257 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 3.99-0.5
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 3.99-0.3
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
intelliseqngs/task_vcf-uniq 1.0.0

  • version: 3.99-0.3
Latest release: about 4 years ago - 2,118 downloads - 806 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 3.98-1.16
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
lucifer001/custom-rs-tf-multiuser gpu

  • version: 3.99-0.3
Latest release: over 3 years ago - 949 downloads - 807 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 3.98-1.16
Latest release: about 6 years ago - 715 downloads - 2,000 dependencies
prismcmap/depmap_versions dd55695d58fb

  • version: 3.99-0.9
Latest release: 11 months ago - 1,452 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 3.98-1.16
Latest release: almost 6 years ago - 702 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 3.98-1.16
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
tercen/runtime-r35 3.5.3-7

  • version: 3.98-1.19
Latest release: over 2 years ago - 700 downloads - 563 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 3.98-1.16
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

  • version: 3.99-0.8
Latest release: over 2 years ago - 635 downloads - 1,650 dependencies
ctomlins/mblast latest

  • version: 3.99-0.9
Latest release: about 2 years ago - 631 downloads - 399 dependencies
dragonflyscience/shellington 2021-09-14

  • version: 3.99-0.6
Latest release: about 3 years ago - 664 downloads - 1,446 dependencies
dragonflyscience/wfm-reports-20.04 2022-10-14

  • version: 3.99-0.8
Latest release: about 2 years ago - 925 downloads - 2,312 dependencies
afcai2c/r-shiny pc22

R Shiniy - Build interactive web applications that can execute R code

  • version: 3.99-0.10
Latest release: about 2 years ago - 492 downloads - 1,748 dependencies
rocker/gdal latest

Build gdal separately to avoid timeouts

  • version: 3.98-1.20
Latest release: about 5 years ago - 520 downloads - 748 dependencies
prismcmap/drc-module robust_DRC

  • version: 3.99-0.9
Latest release: over 1 year ago - 539 downloads - 647 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 3.99-0.13
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 3.98-1.12
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 3.99-0.9
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
tercen/operator_base 1.0.5

  • version: 3.98-1.5
Latest release: almost 6 years ago - 393 downloads - 699 dependencies
prismcmap/norm-module 26be7aa8ab48

  • version: 3.99-0.9
Latest release: almost 2 years ago - 380 downloads - 633 dependencies
dragonflyscience/dragonforest-20.04 20220711_1155

  • version: 3.99-0.8
Latest release: over 2 years ago - 386 downloads - 2,553 dependencies
nuest/ten-simple-rules-dockerfiles latest

  • version: 3.99-0.3
Latest release: about 4 years ago - 361 downloads - 752 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 3.99-0.3
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
datalabauth/covid19 latest

Webapp for visualizing COVID-19 data

  • version: 3.99-0.5
Latest release: about 2 years ago - 320 downloads - 576 dependencies
dhspence/docker-basestation latest

  • version: 3.98-1.12
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 3.99-0.3
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
ocdr/dkube-datascience-rs-sk-cpu test-py

  • version: 3.98-1.20
Latest release: about 4 years ago - 299 downloads - 714 dependencies
nuest/rockerverse-paper latest

  • version: 3.98-1.20
Latest release: about 4 years ago - 286 downloads - 1,133 dependencies
veitveit/complexbrowser release-1.6

  • version: 3.99-0.15, 3.99-0.12
Latest release: 12 months ago - 316 downloads - 1,296 dependencies
dragonflyscience/kakapodock 2022-02-01

  • version: 3.99-0.8
Latest release: almost 3 years ago - 476 downloads - 2,314 dependencies
rapporteket/rap-dev-data nodata

Tailor-made

  • version: 3.99-0.3
Latest release: over 3 years ago - 281 downloads - 1,372 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 3.98-1.11
Latest release: over 6 years ago - 271 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 3.99-0.3
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
tercen/flowsom 0.2.3

  • version: 3.99-0.7
Latest release: about 3 years ago - 277 downloads - 805 dependencies
rapporteket/rap-dev latest

  • version: 3.99-0.3
Latest release: about 3 years ago - 257 downloads - 1,362 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 3.98-1.5
Latest release: over 6 years ago - 502 downloads - 576 dependencies
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

  • version: 3.98-1.5
Latest release: over 6 years ago - 533 downloads - 430 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: 3.98-1.5
Latest release: over 6 years ago - 529 downloads - 457 dependencies
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

  • version: 3.98-1.5
Latest release: over 6 years ago - 522 downloads - 498 dependencies
biocontainers/bioconductor-biomart v2.30.0-1-deb_cv1

  • version: 3.98-1.5
Latest release: over 6 years ago - 519 downloads - 424 dependencies
nuest/rocker-lightgbm latest

A rocker/verse images with Microsoft's LightGBM

  • version: 3.98-1.20
Latest release: over 5 years ago - 252 downloads - 799 dependencies