Package Usage : maven : picard:picard
Explore the latest package usage data for picard:picard in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 187
Total downloads: 44,256,109
Showing first 100 dependents
More details on packages.ecosyste.ms - JSON
luisas/dropseq v3
- version: 2.18.14, 2.18.14-SNAPSHOT
broadinstitute/picard 3.3.0
A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.
- version: 2.27.5-5-gbdfea14-SNAPSHOT
ctomlins/tellread_2022 latest
- version: 2.21.1-SNAPSHOT
nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
- version: 1.70, 2.26.0
doejgi/synbioqc-dual_barcode 1.3.9
version of SynBioQC PacBio sequence validation pipeline for highly similar synthetic constructs
- version: 2.27.5
dolphinnext/ont_variant_calling 1.0
- version: 1.70
trinityctat/batvi devel
- version: 2.25.2
msantoso98/debian_r_picard 2.20.1
- version: 2.20.1-SNAPSHOT
souckmi/fusioncatcher 1.1
- version: 2.21.2-SNAPSHOT
dhspence/docker-skewer latest
base image with skewer for read trimming
- version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
luisas/gatk latest
- version: 2.9.0-1-gf5b9f50-SNAPSHOT
nfcore/methylseq 1.6.1
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 1.70, 2.25.4
intelliseqngs/igv 3.0.3
- version: 2.27.5
dhspence/docker-smallrnaseq latest
- version: 2.4.1(7c4d36e011df1aec4689b51efcada44e92d1817f_1464389670)
alexgenx/grape experimental
- version: 3.0.0, 2.26.4
kentwait/gatk latest
Dockerized GATK for genomics analysis
- version: 2.7.2
ctomlins/testuniv latest
- version: 2.21.1-SNAPSHOT
flomicsbiotech/flomics_qc_rnaseq dev
- version: 2.27.4-SNAPSHOT
chgyi/bio 3.5.1
- version: 2.16.0-SNAPSHOT
ctomlins/testuniv_update latest
- version: 2.21.1-SNAPSHOT
chgyi/picard latest
- version: 2.21.3-SNAPSHOT
dhspence/docker-minimap2 111621
- version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
dhspence/docker-rnaseq latest
- version: 2.9.0-1-gf5b9f50-SNAPSHOT
skchronicles/genome-seek v0.1.0
Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek
- version: 2.27.5
ctomlins/picardtools latest
- version: 3.0.0-15-g642048411-SNAPSHOT, 3.0.0-15-g642048411-SNAPSHOT-all
fischbachlab/nf-miti-projects latest
- version: 1.70
ctomlins/rna-seq-pipeline latest
- version: 2.26.4
jyesselm/rna-map latest
- version: 2.18.7-SNAPSHOT
dhspence/docker-manta 1.5.0
- version: 2.18.9-SNAPSHOT, 2.18.9-SNAPSHOT-all
trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
- version: 2.15.0-SNAPSHOT, 2.2.4(920e3247c340720b009f2398c1b93cce132c9bed_1461793281), 2.20.4-SNAPSHOT
man4ish/demuxlet_v3 latest
- version: 2.26.11
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1
- version: 2.23.3, 2.23.3-sources
nolandocker/chipseq latest
Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.
- version: 2.23.1
msantoso98/picard 2.20.1
- version: 2.20.1-SNAPSHOT
etycksen/dragen4 4.2.4
- version: 2.26.10
galclbl/epityping latest
A repository for the epityping tool container
- version: 2.27.5
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5
- version: 2.17.2, 2.17.2-sources
evolbioinfo/rna-seqc v1.1.9
- version: 1.44.794
bokebiotech/qcpipe v6
- version: 1.70, 2.26.10
dcassol87/dbc_pool 1.0
- version: 2.27.4-SNAPSHOT
bryoinformatics/variant-id v1.0.0
A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).
- version: 2.27.5
ctomlins/testuniv_link latest
- version: 2.18.7-SNAPSHOT
nahyunkong/mito v6
- version: 3.0.0
dhspence/docker-demux latest
- version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
dhspence/docker-genomic-analysis-lite 102321
- version: 2.21.6-SNAPSHOT, 2.21.6-SNAPSHOT-all
brianyee/rnaseq snakemake_1.0.0
- version: 1.70
namzoo/fusioncatcher v1.1
- version: 2.21.2-SNAPSHOT
dabbleofdevops/nextneopi 20230817
- version: 3.0.0
ctomlins/tseq_2 latest
- version: 2.21.1-SNAPSHOT
ctomlins/tseq latest
- version: 2.21.1-SNAPSHOT
hremon331046/neoantigen-vaccine-pipeline nf-pipeline
- version: 2.18.5-SNAPSHOT
cmlapid/picard 2.18.29.0
Command line tools for manipulating HTS data and formats such as SAM/BAM/CRAM and VCF.
- version: 2.18.29-SNAPSHOT
jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
- version: 2.20.2-SNAPSHOT
taniguti/picard 3.0.0
- version: 3.0.0-SNAPSHOT
dhspence/docker-hiccompare latest
- version: 2.18.9-SNAPSHOT, 2.18.9-SNAPSHOT-all
preethiilumina/dragen-bluebee 1.0.3
- version: 1.136(f187319bf8bbde56892d5b5a1ce3fc0529b71a49_1436805856)
hoonbiolab/lohhla v1.1
- version: 2.18.23-SNAPSHOT
gene110/vep_filter v07
- version: 2.21.9-SNAPSHOT
skchronicles/genome-seek_trim_map v0.1.1
Official docker image for trimming and alignment with genome-seek
- version: 2.27.5
intelliseqngs/openjdk11-picard 3.0.2
- version: 2.27.5
nfcore/atacseq 1.2.2
A Docker container for the nf-core/atacseq pipeline.
- version: 2.23.1
elitemao/starsamtoolspicard 1.0
- version: 2.3.0(9a00c87b7ffdb01cfb5a0d6e76556146196babb8_1463071327)
chosenobih/pamlinc v0.4
A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.
- version: 2.18.27-SNAPSHOT
almadengenomics/picard 2.26.7
- version: 2.26.7
cloxd/ctat-mutations 3.3.1
- version: 2.25.2
andrewsg/atac latest
- version: 2.20.7-SNAPSHOT
souckmi/fusioninspector 1.0
- version: 2.20.3-SNAPSHOT
zjnolen/angsd-snakemake-pipeline 0.1
- version: 1.70, 2.27.5
crukmi/target-snakemake-docker 3.2.2
- version: 2.19.0-SNAPSHOT
msantoso98/alignment-tools 1.0.0
- version: 2.20.1-SNAPSHOT
hoonbiolab/star-fusion v1.0
- version: 2.20.3-SNAPSHOT
shengqh/cqs_dnmtools 20231214
- version: 2.18.6-SNAPSHOT
omicsclass/pan-genome v1.0
- version: 1.89
gailr/bamsurgeon-42123 latest
- version: 2.27.3
mrkevindc/add latest
- version: 2.27.5-SNAPSHOT
keithgraham5/cnvrobot_v4_2 latest
- version: 2.27.4-SNAPSHOT
trestlebiosciences/mukherjee 1.0
- version: 2.9.0-1-gf5b9f50-SNAPSHOT
qtulab/miniencode latest
- version: 2.26.10
arifnafees7/ops-pipeline 2
- version: 2.27.4-SNAPSHOT