Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : maven : picard:picard

Explore the latest package usage data for picard:picard in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 187
Total downloads: 44,256,109

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 2.10.4-SNAPSHOT
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
broadinstitute/picard 3.1.1

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

  • version: 3.1.0-SNAPSHOT, 2.27.5-5-gbdfea14-SNAPSHOT, 3.1.1-SNAPSHOT
Latest release: about 1 year ago - 1,091,512 downloads - 640 dependencies
broadinstitute/gtex_rnaseq V10pg

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

  • version: 2.27.1
Latest release: 12 months ago - 276,171 downloads - 914 dependencies
biocontainers/picard-tools v2.18.25dfsg-2-deb_cv1

  • version: 2.18.25
Latest release: about 5 years ago - 208,967 downloads - 711 dependencies
broadinstitute/viral-core latest

  • version: 2.22.2
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.70, 2.25.4
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 2.23.3, 2.23.3-sources
Latest release: almost 2 years ago - 88,219 downloads - 1,101 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 2.23.1
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 2.26.0, 1.70
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
biocontainers/picard v1.139_cv3

Java CLI tools for manipulating HTS data and formats

  • version: 1.139(8ceee52414e8ab9d13e350ff9cd86d48825dd64d_1442240108)
Latest release: almost 6 years ago - 38,954 downloads - 386 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 2.21.1-SNAPSHOT
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
nfcore/rnafusion fusioninspector_2.8.0dev

A Docker image for the nf-core/rnafusion pipeline.

  • version: 2.20.3-SNAPSHOT
Latest release: over 2 years ago - 24,036 downloads - 1,302 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 2.21.6-SNAPSHOT-all, 2.21.6-SNAPSHOT
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
biocontainers/artemis v17.0.1dfsg-2-deb_cv1

  • version: 2.18.25
Latest release: over 5 years ago - 9,505 downloads - 887 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 2.18.25
Latest release: about 5 years ago - 7,507 downloads - 1,167 dependencies
broadinstitute/viral-assemble latest

  • version: 2.22.2
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 2.22.2
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: almost 6 years ago - 3,649 downloads - 733 dependencies
luisas/samtools latest

  • version: 2.17.11-SNAPSHOT
Latest release: over 6 years ago - 3,554 downloads - 342 dependencies
dhspence/docker-spikein v1.1

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: about 6 years ago - 3,239 downloads - 729 dependencies
nfcore/deepvariant dev

A Docker image for the nf-core/deepvariant pipeline.

  • version: 2.18.7-SNAPSHOT
Latest release: almost 6 years ago - 3,749 downloads - 234 dependencies
dhspence/docker-bisulfite latest

Forked from Chris Miller's docker image

  • version: 2.4.1(7c4d36e011df1aec4689b51efcada44e92d1817f_1464389670)
Latest release: almost 6 years ago - 1,968 downloads - 650 dependencies
dhspence/docker-biscuit latest

  • version: 2.4.1(7c4d36e011df1aec4689b51efcada44e92d1817f_1464389670)
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
dhspence/docker-star latest

STAR plus helper script plus samtools

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: almost 7 years ago - 1,972 downloads - 729 dependencies
dhspence/docker-haloplexqc latest

Haloplex QC scripts

  • version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
Latest release: almost 7 years ago - 1,801 downloads - 730 dependencies
qdidiscoveryservices/bwa_samtools_biobambam2 latest

  • version: 2.23.2
Latest release: over 3 years ago - 1,678 downloads - 1,561 dependencies
dhspence/docker-macs2 latest

  • version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
Latest release: over 6 years ago - 1,767 downloads - 730 dependencies
dhspence/docker-regtools latest

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: almost 7 years ago - 1,189 downloads - 732 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 2.24.1
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
nfcore/nascent dev

Nascent Transcription Processing Pipeline

  • version: 2.22.0-SNAPSHOT
Latest release: over 4 years ago - 1,359 downloads - 214 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.70
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
intelliseqngs/igv 3.0.3

  • version: 2.27.5
Latest release: over 1 year ago - 2,797 downloads - 509 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 2.27.5
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
dhspence/docker-smallrnaseq latest

  • version: 2.4.1(7c4d36e011df1aec4689b51efcada44e92d1817f_1464389670)
Latest release: over 6 years ago - 789 downloads - 911 dependencies
nfcore/mnaseseq latest

A Docker container for the nf-core/mnaseseq pipeline.

  • version: 2.21.9-SNAPSHOT
Latest release: over 2 years ago - 1,092 downloads - 212 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.70
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
dhspence/docker-subread 1.0

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: about 6 years ago - 674 downloads - 729 dependencies
biocontainers/gatk v3.4_cv1

  • version: 1.139(8ceee52414e8ab9d13e350ff9cd86d48825dd64d_1442240108)
Latest release: over 6 years ago - 896 downloads - 1,201 dependencies
wiebekenza/pac latest

  • version: 2.20.3-SNAPSHOT
Latest release: almost 2 years ago - 508 downloads - 412 dependencies
dhspence/docker-sicer latest

  • version: 2.18.9-SNAPSHOT-all, 2.18.9-SNAPSHOT
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 2.23.3, 2.23.3-sources
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 2.27.5
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
dhspence/docker-methpipe latest

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: almost 6 years ago - 321 downloads - 735 dependencies
ctomlins/aligners latest

  • version: 2.18.20-SNAPSHOT
Latest release: about 4 years ago - 314 downloads - 564 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 2.17.2, 2.17.2-sources
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
dhspence/docker-basestation latest

  • version: 2.18.9-SNAPSHOT-all, 2.18.9-SNAPSHOT
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
ctomlins/picardmetrics latest

  • version: 1.126(4691ee611ac205d4afe2a1b7a2ea975a6f997426_1417447214)
Latest release: about 3 years ago - 503 downloads - 574 dependencies
doejgi/synbioqc-pbj 3.3.1

  • version: 2.27.5
Latest release: about 1 year ago - 451 downloads - 1,105 dependencies
dhspence/docker-dss latest

  • version: 2.18.9-SNAPSHOT, 2.18.9-SNAPSHOT-all
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
doejgi/synbioqc-dual_barcode 1.3.7

version of SynBioQC PacBio sequence validation pipeline for highly similar synthetic constructs

  • version: 2.27.5
Latest release: about 1 year ago - 671 downloads - 1,113 dependencies
dhspence/docker-ichor latest

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: over 6 years ago - 236 downloads - 961 dependencies
flomicsbiotech/flomics_qc_rnaseq dev

  • version: 2.27.4-SNAPSHOT
Latest release: over 1 year ago - 9,416 downloads - 235 dependencies
trinityctat/batvi devel

  • version: 2.25.2
Latest release: almost 2 years ago - 161 downloads - 415 dependencies
chgyi/bio 3.5.1

  • version: 2.16.0-SNAPSHOT
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
ctomlins/testuniv_update latest

  • version: 2.21.1-SNAPSHOT
Latest release: almost 4 years ago - 153 downloads - 758 dependencies
dhspence/docker-rnaseq latest

  • version: 2.9.0-1-gf5b9f50-SNAPSHOT
Latest release: over 6 years ago - 147 downloads - 665 dependencies
dhspence/docker-minimap2 111621

  • version: 2.12.1-SNAPSHOT-all, 2.12.1-SNAPSHOT
Latest release: about 3 years ago - 147 downloads - 734 dependencies
dhspence/docker-manta 1.5.0

  • version: 2.18.9-SNAPSHOT, 2.18.9-SNAPSHOT-all
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 2.20.4-SNAPSHOT, 2.2.4(920e3247c340720b009f2398c1b93cce132c9bed_1461793281), 2.15.0-SNAPSHOT
Latest release: over 3 years ago - 123 downloads - 805 dependencies
dhspence/docker-hiccompare latest

  • version: 2.18.9-SNAPSHOT-all, 2.18.9-SNAPSHOT
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
biocontainers/eosc-pilot v1.0-remastering_cv1.0

  • version: 2.9.2-SNAPSHOT
Latest release: about 6 years ago - 109 downloads - 309 dependencies
doejgi/synbioqc-env 6.1.1

  • version: 2.27.5
Latest release: over 1 year ago - 108 downloads - 1,083 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.70
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
dhspence/docker-skewer latest

base image with skewer for read trimming

  • version: 2.12.1-SNAPSHOT, 2.12.1-SNAPSHOT-all
Latest release: almost 6 years ago - 76 downloads - 279 dependencies