robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20250213

weizhoujp/rchtc 4.3.0

crukcibioinformatics/sequencingbase 9.3.4

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

cheyne0328/rstudio zxy

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

qdidiscoveryservices/seurat_cell_annotation latest

koki/velocytor 20221015

alanocallaghan/high-dimensional-stats-r latest

koki/bindsc 20220609

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

mlepetit/rnormalisation 1.0.0

atttilacs/dsp_geomxtools latest

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

gyusikhwang/tgs v1

emersonchao/dsc180b latest

tercen/normalise_cytof_operator 0.2.3

brusconi/seurat new

stormgod/deepmaps-cpu latest

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

nfancy/scflow 0.7.4

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

yosuketanigawa/rstudio_yt latest

elynrfw/gerald-test latest

njjai/genebasis latest

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

etretiakov/rocker-session latest

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3

repbioinfo/transformgampoi latest

bioedge/edge_24_1_ubuntu18 20231115

jingxin/terrascpipe v0

koki/sctensor-workshop sha-fa8c4cf

fabianegli/scp-recommendations-2022 1.0

jackiezhuqi/bio-rstudio latest

winuthayanon/rstudio 4.3.0

dabbleofdevops/r-datascience 4.2.2

singha53/modc v0.1

crukmi/liana_tensor2 0.1.9

madhu99/sb6 latest

cgrlab/qiime2 2023.5

shl198/rna_ppl latest

jonasmrr/scrnaseq-pipeline latest

btrspg/vscode-dkd-env latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

felixschlesinger/assign_types v0.2

gaspardr/r-env test

My R environment for analyses and development

ycli1995/bioinfo_dev 1.1.0

ucigenomics/spatiallibd latest

tercen/compensate_cytof_operator 0.0.7

wyangwu/r4.1.2 latest

compbiocore/jupyterhub-docker-images-jh_image 20230524

bioxfu/xseurat2 latest

wlc27/dcanr v1

tercen/tercen-studio-flowsuite 3.15-6

robertplayer/scidap-genelists v5.0.0

fallingstar10/gmadeomicsrocker tiny

vidhyagnanasekaran/rocker-single-cell v1

cwong23/stx_env latest

Environment for spatial pipeline

gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

gnwanne/decontx latest

buddej/scshc 0.1.0

weizhoujp/r-chtc-v1 latest

daemontus/software-cell-oracle latest

nilesh0404/st_visualizer m1_0.1.2

mirekphd/ml-cpu-r40-rs-cust 20230912

louisk92/spapros_genebasis v1.0

bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

maxfieldkelsey/snakesenescence latest

image for use in snakemake

biocontainers/isee-galaxy v3.13_cv1.0.0

denglab/vpfkit_base latest

cplaisier/ccafv2_extra latest

porchard/decontx 20230104

abelean/seurat_desctools 4.1.0

broadinstitute/terra-jupyter-aou 2.1.13

testalabgh/downstream signac-1.4.0

qdidiscoveryservices/ssgsea 1.1

bigomics/omicsplayground-base ub2204_v4

johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

koki/delayedtensor-experiments 20240923

koki/tensor-projects-machima 20220827

tercen/debarcoding_cytof_operator 0.3.2