robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20251014

mlepetit/ranalysis 3.3.4

weizhoujp/rchtc 4.3.0

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

crukcibioinformatics/sequencingbase 9.5.4

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

nciccbr/ccbr_r_4.3.0 v1

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

qdidiscoveryservices/seurat_cell_annotation latest

koki/velocytor 20221015

qdidiscoveryservices/bam_to_10x_counts latest

alanocallaghan/high-dimensional-stats-r latest

koki/bindsc 20220609

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

atttilacs/dsp_geomxtools latest

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

stefanucciluca/tregopathies latest

biohpc/scrna2023 2.0.2

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

gyusikhwang/tgs v1

gesiscss/binder-r2d-g5b5b759-fraunhofer-2ditmp-2dalister-26fdaf 11bce8bee1e1b0252d2ee5356a32b5b44c0dff4d

emersonchao/dsc180b latest

altyn745/txsim latest

tercen/normalise_cytof_operator 0.2.3

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

evafastpf/commot 0.1

brusconi/seurat new

stormgod/deepmaps-cpu latest

sameetmehta/docker_report_apptainer devel

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

nfancy/scflow 0.7.4

qdidiscoveryservices/pseudobulk 2.0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

alexthiery/archr_seurat_signac_mega 3.2

bixbeta/pavian v1

yosuketanigawa/rstudio_yt latest

elynrfw/gerald-test latest

njjai/genebasis latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

luisas/rdeanalysis latest

gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3

repbioinfo/transformgampoi latest

bioedge/edge_24_1_ubuntu18 20231115

jenfisher7/rstudio_sbae latest

bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

jingxin/terrascpipe v0

koki/sctensor-workshop sha-fa8c4cf

fabianegli/scp-recommendations-2022 1.0

dsouzd04/himc_zellkonverter 1.6.5

viascientific/rstudio-app-isee 1.0

jackiezhuqi/bio-rstudio latest

dantingz/seurat 1.0.2

winuthayanon/rstudio 4.3.0

dabbleofdevops/r-datascience 4.2.2

crukmi/nas-app latest

singha53/modc v0.1

crukmi/liana_tensor2 0.1.9

madhu99/sb6 latest

cgrlab/qiime2 2023.5

jonasmrr/scrnaseq-pipeline latest

btrspg/vscode-dkd-env latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

felixschlesinger/assign_types v0.2

gaspardr/r-env test

My R environment for analyses and development

ycli1995/bioinfo_dev 1.1.0

brianyee/celligrate 55ba642

arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

ucigenomics/spatiallibd latest

dnbelabc4/dnbc4dev 2.1.2

tercen/compensate_cytof_operator 0.0.7

wyangwu/r4.1.2 latest

compbiocore/jupyterhub-docker-images-jh_image 20230524

dongminshin/sc_ppl 1.71