jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

rocker/geospatial 4.5.1

Docker-based Geospatial toolkit for R, built on versioned Rocker images

veupathdb/rserve 8.2.5

broadinstitute/terra-jupyter-aou 2.1.13

rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

rocker/ropensci 3.4.1

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

rocker/ml-verse 4.4.1

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 56

mesosphere/mesosphere-data-toolkit latest

biocontainers/imputeme vv1.0.7_cv1

qdidiscoveryservices/ms_pipeline latest

patroonorg/patroondeps latest

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

mesosphere/mesosphere-jupyter-service latest

araalinetworks/devproxy 0.9.91

broadinstitute/fungal_gatk4 gatk4.5.0.0

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/airrflowreport dev

dragonflyscience/sharknado 2025-06-23

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

ebsproject/ba-worker 22.12.16

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

mirekphd/ml-cpu-r35-rs 20190201

ocdr/ds-apps 1.0.43

prismcmap/depmap_versions v0.1.0

dhspence/docker-homer latest

docker with chip-seq tool homer

davidspek/kubeflow-datascience-notebook 0.8.6

This image contains the regular jupyter/datascience-notebook edited for it to work in kubeflow.

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

gesiscss/singleuser-orc r2d-49e91d9

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

afcai2c/r-studio rebuild

Basic installation of R Studio.

dragonflyscience/shellington 2021-09-14

gesiscss/binder-numeconcopenhagen-2dlectures-2d2020-a504cd 3037261943dce17c68a5d932223d3724580e1671

dragonflyscience/wfm-reports-20.04 2022-10-14

afcai2c/r-shiny pc22

R Shiniy - Build interactive web applications that can execute R code

gesiscss/binder-arnim-2dstmdemo-166b8a 3c29f7eaee928ba308137abb0effe5998f8ffa52

gesiscss/binder-pablobernabeu-2dmodality-2dswitch-2deffects-2demerge-2dearly-2dand-2dincrease-2dthroughout-2dconceptual-2dprocessing-e2667d 3173ddce2b5cc44e37c810c654f4cc84c147c45b

prismcmap/drc-module v0.0.1

veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

dhspence/docker-sicer latest

qdidiscoveryservices/limma-voom 4.2.0

phidata/jupyterlab 3.5.2

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

prismcmap/norm-module v0.0.1

dragonflyscience/dragonforest-20.04 20220711_1155

kraigerl95/jupyternotebook-r stable

Jupyter Notebook wiht personal changes

dhspence/docker-basestation latest

qdidiscoveryservices/py3_cellranger 6.1.2

openanalytics/shinyproxy-juypter-datascience latest

Running Jupyter notebooks inside ShinyProxy

dragonflyscience/kakapodock 2024-07-15

mirekphd/ml-cpu-r35-jnb devel_2b2752c

tercen/flowsom 0.2.3

koki/pagoda latest

tercen/runtime-flowsuite 3.15-4

ebsproject/ba-mrbean 22.10.24-dev

koki/sctensor-experiments 20220208

evolbioinfo/deseq2 v1.28.1

dragonflyscience/nefd-18.04 2021-12-09

qdidiscoveryservices/scrna_downstream 1.1

koki/biocdev 20230818

anand7899/rmarkdown latest

prismcmap/sushi v0.0.2

inseefrlab/travail-collaboratif 0.1.0

chgyi/bio 3.5.1

canaantt/notitia-ocpu latest

This is part of zager/notitia.

kazumayamamoto/dsc180a-q1-project latest

nuest/reproducible-research-at-giscience latest

chgyi/metaware_rna_denovo latest

mirekphd/ml-cpu-r35-nx devel_fdbf539

truecharts/jupyter-r build20230428101109

dhspence/docker-manta 1.5.0

dragonflyscience/antip-ipm-18.04 2022-06-23-2

phidata/jupyterlab-r 3.4.8

dragonflyscience/dragonverse-22.04 2025-07-30

dragonflyscience/antips-tracks 2022-12-19

inseefrlab/onyxia-r ds-r4.1.2-gpu-2022.09.08

A R environment with a collection of standard data science packages.