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Package Usage : pypi : snakemake

Explore the latest package usage data for snakemake in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 102
Total downloads: 2,879,480
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

snakemake/snakemake v9.4.0

The official Snakemake container image.

  • version: 7.24.2 0.g1fb3cef5.dirty, 7.25.0 0.g5e5cb619.dirty
Latest release: 7 months ago - 1,345,268 downloads - 167 dependencies
ctomlins/tellread_2022 latest

  • version: 5.7.0
Latest release: almost 3 years ago - 48 downloads - 711 dependencies
elle72/basic pygenometrack

  • version: 3.13.3
Latest release: 5 months ago - 55,692 downloads - 397 dependencies
snakemake/snakemake-tutorial v9.0.0

A container for running the official Snakemake tutorial

  • version: 7.3.8, 7.4.0 0.g3c51aa26.dirty
Latest release: 5 months ago - 15,437 downloads - 346 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 5.13.0
Latest release: about 2 years ago - 3,175 downloads - 153 dependencies
oxsecurity/megalinter-worker-go v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,916 downloads - 2,694 dependencies
oxsecurity/megalinter-rust v8.8.0

  • version: 7.24.2
Latest release: 6 months ago - 22,430 downloads - 2,041 dependencies
oxsecurity/megalinter v8.1.0

  • version: 7.24.2, 7.25.0
Latest release: about 1 year ago - 1,420,627 downloads - 5,467 dependencies
oxsecurity/megalinter-python v8.8.0

  • version: 7.24.2, 7.25.0
Latest release: 6 months ago - 633,007 downloads - 2,042 dependencies
oxsecurity/megalinter-javascript v8.8.0

  • version: 7.24.2, 7.25.0
Latest release: 6 months ago - 875,861 downloads - 2,346 dependencies
oxsecurity/megalinter-terraform v8.8.0

  • version: 7.24.2, 7.25.0
Latest release: 6 months ago - 791,309 downloads - 2,490 dependencies
oxsecurity/megalinter-documentation v8.1.0

  • version: 7.24.2, 7.25.0
Latest release: about 1 year ago - 163,757 downloads - 2,131 dependencies
oxsecurity/megalinter-dotnet v8.8.0

  • version: 7.24.2, 7.25.0
Latest release: 6 months ago - 364,770 downloads - 2,862 dependencies
oxsecurity/megalinter-php v8.8.0

  • version: 7.24.1, 7.25.0
Latest release: 6 months ago - 91,073 downloads - 2,127 dependencies
oxsecurity/megalinter-java v8.8.0

  • version: 7.24.2, 7.25.0
Latest release: 6 months ago - 388,226 downloads - 2,120 dependencies
oxsecurity/megalinter-go v9.1.0

  • version: 7.24.2, 7.25.0
Latest release: about 2 months ago - 99,858 downloads - 2,280 dependencies
oxsecurity/megalinter-salesforce v8.1.0

  • version: 7.24.2, 7.25.0
Latest release: about 1 year ago - 42,334 downloads - 3,899 dependencies
oxsecurity/megalinter-only-snakemake_lint v8.8.0

  • version: 7.32.3, 7.24.2
Latest release: 6 months ago - 20,225 downloads - 55 dependencies
emvcaest/markerscan latest

  • version: 6.15.1
Latest release: almost 3 years ago - 195 downloads - 526 dependencies
oxsecurity/megalinter-worker-python v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,796 downloads - 2,384 dependencies
vanessa/snakemake lammps

  • version: 5.26.1 19.g0fb0a2ad, 5.26.1 27.g540386a9.dirty
Latest release: almost 2 years ago - 110 downloads - 119 dependencies
oxsecurity/megalinter-ruby v8.7.0

  • version: 7.24.2
Latest release: 7 months ago - 36,696 downloads - 2,153 dependencies
alexgenx/grape experimental

  • version: 7.30.2
Latest release: over 2 years ago - 151 downloads - 339 dependencies
ztang301/exph vHipSTR

  • version: 3.13.3
Latest release: about 1 year ago - 5,004 downloads - 402 dependencies
ctomlins/testuniv latest

  • version: 5.7.0
Latest release: about 4 years ago - 89 downloads - 536 dependencies
oxsecurity/megalinter-swift v8.8.0

  • version: 7.25.0
Latest release: 6 months ago - 10,052 downloads - 2,134 dependencies
humanpangenomics/verkko_hic 0.0.1--b9f444928b4f920d0ff399466d2805883f1b38d8

  • version: 7.24.0
Latest release: almost 3 years ago - 262 downloads - 166 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 7.16.0
Latest release: over 2 years ago - 1,604 downloads - 251 dependencies
oxsecurity/megalinter-worker-rust v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,762 downloads - 2,128 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 7.19.1
Latest release: almost 3 years ago - 50 downloads - 897 dependencies
oxsecurity/megalinter-worker-salesforce v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 2,070 downloads - 3,899 dependencies
oxsecurity/megalinter-worker-javascript v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,888 downloads - 2,647 dependencies
oxsecurity/megalinter-worker-java v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,929 downloads - 2,494 dependencies
oxsecurity/megalinter-worker-documentation v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,913 downloads - 2,425 dependencies
ctomlins/testuniv_update latest

  • version: 5.7.0
Latest release: almost 5 years ago - 168 downloads - 758 dependencies
oxsecurity/megalinter-worker-terraform v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,896 downloads - 2,759 dependencies
oxsecurity/megalinter-worker-dotnet v7.13.0

  • version: 7.32.4
Latest release: over 1 year ago - 1,592 downloads - 3,052 dependencies
oxsecurity/megalinter-worker-swift v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,878 downloads - 2,593 dependencies
oxsecurity/megalinter-worker-ruby v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,757 downloads - 2,446 dependencies
oxsecurity/megalinter-worker-php v8.1.0

  • version: 7.32.4
Latest release: about 1 year ago - 1,811 downloads - 2,456 dependencies
andrewrrelmore/genepi_vscode test

  • version: 7.25.4
Latest release: about 2 years ago - 48 downloads - 1,188 dependencies
haje01/alpaka-tool 0.1.0

  • version: 7.28.2, 7.19.1
Latest release: over 2 years ago - 186 downloads - 756 dependencies
denklewer/linseedv2 latest

  • version: 7.8.1
Latest release: almost 3 years ago - 425 downloads - 1,153 dependencies
vanessa/snakemake.scif latest

Tutorial to show using Snakemake with a Scientific Filesystem for an analysis

  • version: 4.4.0
Latest release: almost 7 years ago - 207 downloads - 320 dependencies
gesiscss/binder-nbisweden-2dproject-5ftemplate-29dfe9 606e70796db06441df1106600499a6f6250959ec

  • version: 5.9.1
Latest release: almost 6 years ago - 73 downloads - 75 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dteraoka-2ftest2-2egit-b84b80 7288890713ef4a828af5622cb313720acbce71a9

  • version: 7.8.5
Latest release: over 3 years ago - 44 downloads - 1,892 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 7.19.1
Latest release: almost 3 years ago - 33 downloads - 598 dependencies
gru4/scan2workinghg38 latest

  • version: 7.26.0
Latest release: over 2 years ago - 71 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 7.26.0
Latest release: over 2 years ago - 88 downloads - 777 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2frepo987-2egit-5a95cd 92c0e6564f946ce1f6c3508fe07aec788f7f6477

  • version: 7.18.2
Latest release: almost 3 years ago - 50 downloads - 1,459 dependencies
mrkevindc/fgbio latest

  • version: 7.23.1 0.ga110ae0a.dirty
Latest release: over 2 years ago - 94 downloads - 349 dependencies
ericsalomaki/covid_new_pango 05092023

  • version: 6.8.0
Latest release: over 2 years ago - 159 downloads - 277 dependencies
alexsickler/open-pedcan latest

  • version: 5.8.1
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2darita-2farita0808-2d9-2egit-bbe99b 6480b370bfde29df3188a1897d27e9bdb7499dc0

  • version: 7.8.5
Latest release: over 3 years ago - 46 downloads - 1,892 dependencies
sbastkowski/quatradis-base latest-arm64

  • version: 7.24.0
Latest release: 6 months ago - 192 downloads - 396 dependencies
kenshua/bellsprout latest

  • version: 0 untagged.1.g9a0aaa7.dirty
Latest release: almost 3 years ago - 60 downloads - 383 dependencies
mauriciogtec/spacedata multi

  • version: 7.30.1
Latest release: over 2 years ago - 125 downloads - 300 dependencies
samuelrc87/gpa 0.2.0

  • version: 7.18.2 0.ga5c35239.dirty
Latest release: almost 3 years ago - 80 downloads - 345 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 7.30.2, 7.19.1
Latest release: about 1 year ago - 1,187 downloads - 6,961 dependencies
mskmind/luna current

  • version: 7.18.1
Latest release: almost 2 years ago - 86 downloads - 512 dependencies
rpbs/seamless-binder-demo latest

  • version: 7.19.1
Latest release: almost 3 years ago - 48 downloads - 1,335 dependencies
dimensionlab/simulation-studio-backend test

  • version: 6.5.3
Latest release: almost 3 years ago - 20 downloads - 2,788 dependencies
luvroot/ml-workspace v0.13.2

  • version: 6.5.3
Latest release: almost 3 years ago - 21 downloads - 2,936 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 7.19.1
Latest release: almost 3 years ago - 20 downloads - 598 dependencies
mrkevindc/variants latest

  • version: 7.23.1 0.ga110ae0a.dirty
Latest release: almost 3 years ago - 67 downloads - 349 dependencies
jjacobson95/snekmer_env v1.0

  • version: 7.0, 7.0.0
Latest release: almost 3 years ago - 28 downloads - 236 dependencies
ctomlins/testuniv_link latest

  • version: 5.5.4
Latest release: about 5 years ago - 22 downloads - 118 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 7.26.0
Latest release: over 2 years ago - 61 downloads - 2,387 dependencies
evolbioinfo/pangolin v3.1.16

https://github.com/cov-lineages/pangolin

  • version: 7.24.0, 6.8.0
Latest release: about 4 years ago - 1,379 downloads - 46 dependencies
victoorramos/hiv_screening latest

  • version: 7.19.1
Latest release: almost 3 years ago - 137 downloads - 218 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2fbench-5fcreate-5frepo-2egit-0e7aac bdec0feb61e7d3c55cd9ff88c509ae8c7d1a1493

  • version: 7.8.5
Latest release: over 3 years ago - 32 downloads - 1,892 dependencies
ctomlins/tseq_2 latest

  • version: 5.7.0
Latest release: about 5 years ago - 26 downloads - 538 dependencies
ctomlins/tseq latest

  • version: 5.7.0
Latest release: about 5 years ago - 25 downloads - 536 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dkondokaho-2ffolding-5fnumber-2egit-56fe24 06a4305c5f0fde922627b806e74e38e4b5c127ba

  • version: 7.8.5
Latest release: over 3 years ago - 16 downloads - 1,892 dependencies
hremon331046/neoantigen-vaccine-pipeline nf-pipeline

  • version: 5.4.4
Latest release: over 1 year ago - 193 downloads - 436 dependencies
hkubal/clusterv v1.3

ClusterV: finding HIV subtypes from ONT sequencing data

  • version: 7.8.2
Latest release: 11 months ago - 144 downloads - 285 dependencies
cbgr/cobind 0.9.1

Necessary software to run COBIND pipeline.

  • version: 6.15.5
Latest release: almost 2 years ago - 175 downloads - 1,369 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2fd-5ftest-5f345-2egit-5bbf36 def236a0e156da2fcdae15b0638d3fefc0670550

  • version: 7.14.1
Latest release: almost 3 years ago - 20 downloads - 1,463 dependencies