Ecosyste.ms: Docker

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Package Usage : pypi : snakemake

Explore the latest package usage data for snakemake in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 102
Total downloads: 2,879,480

More details on packages.ecosyste.ms - JSON

snakemake/snakemake v8.0.1

The official Snakemake container image.

  • version: 7.32.3 0.gb76cfff4.dirty, 7.25.0 0.g5e5cb619.dirty, 7.24.2 0.g1fb3cef5.dirty
Latest release: 9 months ago - 974,812 downloads - 167 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 5.6.0
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
broadinstitute/horsefish pgs_visualizations_dev

  • version: 5.10.0
Latest release: 9 months ago - 90,224 downloads - 780 dependencies
snakemake/snakemake-tutorial v7.4.3

A container for running the official Snakemake tutorial

  • version: 7.3.8, 7.4.0 0.g3c51aa26.dirty
Latest release: about 1 year ago - 9,867 downloads - 346 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 5.13.0
Latest release: 12 months ago - 2,025 downloads - 153 dependencies
oxsecurity/megalinter-rust v7.7.0

  • version: 7.24.2, 7.32.3
Latest release: 9 months ago - 3,866 downloads - 2,128 dependencies
oxsecurity/megalinter v7.7.0

  • version: 7.25.0, 7.24.2, 7.32.3
Latest release: 9 months ago - 690,473 downloads - 5,467 dependencies
oxsecurity/megalinter-python v7.7.0

  • version: 7.32.3, 7.24.2, 7.25.0
Latest release: 9 months ago - 182,742 downloads - 2,131 dependencies
oxsecurity/megalinter-javascript v7.7.0

  • version: 7.24.2, 7.25.0, 7.32.3
Latest release: 9 months ago - 285,878 downloads - 2,346 dependencies
oxsecurity/megalinter-terraform v7.7.0

  • version: 7.32.3, 7.25.0, 7.24.2
Latest release: 9 months ago - 195,257 downloads - 2,490 dependencies
oxsecurity/megalinter-documentation v7.7.0

  • version: 7.25.0, 7.24.2, 7.32.3
Latest release: 9 months ago - 105,630 downloads - 2,131 dependencies
oxsecurity/megalinter-dotnet v7.7.0

  • version: 7.32.3, 7.24.2, 7.25.0
Latest release: 9 months ago - 149,872 downloads - 2,862 dependencies
oxsecurity/megalinter-php v7.7.0

  • version: 7.32.3, 7.24.1, 7.25.0
Latest release: 9 months ago - 33,601 downloads - 2,127 dependencies
oxsecurity/megalinter-java v7.4.0

  • version: 7.24.2, 7.25.0
Latest release: 12 months ago - 34,230 downloads - 2,120 dependencies
oxsecurity/megalinter-go v7.7.0

  • version: 7.25.0, 7.32.3, 7.24.2
Latest release: 9 months ago - 21,071 downloads - 2,407 dependencies
oxsecurity/megalinter-salesforce v7.7.0

  • version: 7.32.3, 7.24.2, 7.25.0
Latest release: 9 months ago - 14,171 downloads - 3,899 dependencies
evolbioinfo/pangolin v4.3.1-v1.23.1-v0.3.19-v0.1.12

https://github.com/cov-lineages/pangolin

  • version: 7.24.0, 6.8.0
Latest release: 11 months ago - 771 downloads - 46 dependencies
oxsecurity/megalinter-ruby v7.7.0

  • version: 7.31.0, 7.24.2
Latest release: 9 months ago - 4,746 downloads - 2,153 dependencies
oxsecurity/megalinter-swift v7.3.0

  • version: 7.25.0
Latest release: about 1 year ago - 1,074 downloads - 2,134 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 7.16.0
Latest release: over 1 year ago - 588 downloads - 251 dependencies
ctomlins/testuniv_update latest

  • version: 5.7.0
Latest release: almost 4 years ago - 153 downloads - 758 dependencies
oxsecurity/megalinter-only-snakemake_lint beta_20240101-1607

  • version: 7.24.2, 7.32.3
Latest release: 9 months ago - 918 downloads - 55 dependencies
vanessa/snakemake.scif latest

Tutorial to show using Snakemake with a Scientific Filesystem for an analysis

  • version: 4.4.0
Latest release: over 5 years ago - 118 downloads - 320 dependencies
spashleyfu/jax-cnv_with_snakemake latest

  • version: 7.19.1
Latest release: over 1 year ago - 92 downloads - 406 dependencies
vanessa/encode-demo-workflow latest

  • version: 5.5.4
Latest release: about 5 years ago - 87 downloads - 492 dependencies
vanessa/snakemake lammps

  • version: 5.26.1 27.g540386a9.dirty, 5.26.1 19.g0fb0a2ad
Latest release: 9 months ago - 91 downloads - 119 dependencies
ctomlins/testuniv latest

  • version: 5.7.0
Latest release: almost 3 years ago - 69 downloads - 536 dependencies
gesiscss/binder-nbisweden-2dproject-5ftemplate-29dfe9 606e70796db06441df1106600499a6f6250959ec

  • version: 5.9.1
Latest release: over 4 years ago - 66 downloads - 75 dependencies
evolbioinfo/snakemake v5.6.0

  • version: 5.6.0
Latest release: almost 5 years ago - 38 downloads - 291 dependencies
ctomlins/tellread_2022 latest

  • version: 5.7.0
Latest release: over 1 year ago - 34 downloads - 711 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 7.19.1
Latest release: over 1 year ago - 35 downloads - 897 dependencies
haje01/alpaka-tool 0.1.0

  • version: 7.28.2, 7.19.1
Latest release: over 1 year ago - 118 downloads - 756 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 7.19.1, 7.30.2
Latest release: 11 months ago - 58 downloads - 6,961 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dteraoka-2ftest2-2egit-b84b80 7288890713ef4a828af5622cb313720acbce71a9

  • version: 7.8.5
Latest release: about 2 years ago - 21 downloads - 1,892 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 7.19.1
Latest release: over 1 year ago - 13 downloads - 598 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2frepo987-2egit-5a95cd 92c0e6564f946ce1f6c3508fe07aec788f7f6477

  • version: 7.18.2
Latest release: almost 2 years ago - 17 downloads - 1,459 dependencies
ericsalomaki/covid_new_pango 05092023

  • version: 6.8.0
Latest release: over 1 year ago - 80 downloads - 277 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2darita-2farita0808-2d9-2egit-bbe99b 6480b370bfde29df3188a1897d27e9bdb7499dc0

  • version: 7.8.5
Latest release: about 2 years ago - 15 downloads - 1,892 dependencies
sbastkowski/quatradis-base latest

  • version: 7.24.0
Latest release: over 1 year ago - 43 downloads - 396 dependencies
kenshua/bellsprout latest

  • version: 0 untagged.1.g9a0aaa7.dirty
Latest release: over 1 year ago - 10 downloads - 383 dependencies
samuelrc87/gpa latest

  • version: 7.18.2 0.ga5c35239.dirty
Latest release: over 1 year ago - 13 downloads - 345 dependencies
mskmind/luna dev

  • version: 7.18.1
Latest release: 9 months ago - 15 downloads - 512 dependencies
rpbs/seamless-binder-demo latest

  • version: 7.19.1
Latest release: over 1 year ago - 12 downloads - 1,335 dependencies
dimensionlab/simulation-studio-backend test

  • version: 6.5.3
Latest release: over 1 year ago - 10 downloads - 2,788 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 7.19.1
Latest release: over 1 year ago - 10 downloads - 598 dependencies
luvroot/ml-workspace v0.13.2

  • version: 6.5.3
Latest release: over 1 year ago - 11 downloads - 2,936 dependencies
jjacobson95/snekmer_env v1.0

  • version: 7.0, 7.0.0
Latest release: almost 2 years ago - 13 downloads - 236 dependencies
ctomlins/testuniv_link latest

  • version: 5.5.4
Latest release: almost 4 years ago - 10 downloads - 118 dependencies
victoorramos/hiv_screening latest

  • version: 7.19.1
Latest release: over 1 year ago - 10 downloads - 218 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2fbench-5fcreate-5frepo-2egit-0e7aac bdec0feb61e7d3c55cd9ff88c509ae8c7d1a1493

  • version: 7.8.5
Latest release: about 2 years ago - 10 downloads - 1,892 dependencies
ctomlins/tseq latest

  • version: 5.7.0
Latest release: almost 4 years ago - 10 downloads - 536 dependencies
ctomlins/tseq_2 latest

  • version: 5.7.0
Latest release: almost 4 years ago - 10 downloads - 538 dependencies
hkubal/clusterv v1.2

ClusterV: finding HIV subtypes from ONT sequencing data

  • version: 7.8.2
Latest release: 10 months ago - 29 downloads - 285 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2fd-5ftest-5f345-2egit-5bbf36 def236a0e156da2fcdae15b0638d3fefc0670550

  • version: 7.14.1
Latest release: almost 2 years ago - 11 downloads - 1,463 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fakaiken-2fsdsdadaw-2egit-9e9620 9e4e7df40f74d394d760b83413c979bb08a4a610

  • version: 7.14.1
Latest release: almost 2 years ago - 9 downloads - 1,463 dependencies
rodrigoeusebio/insaflu_snakemake 1.0

  • version: 7.19.1 0.gbd4505b5.dirty, 7.19.1
Latest release: over 1 year ago - 10 downloads - 359 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dkondokaho-2fcheck-5ffb62-5fimp2-2egit-35fc5c b218d938ab6f36626bec854ae1507bd0eae2fac6

  • version: 7.14.0
Latest release: almost 2 years ago - 10 downloads - 1,391 dependencies
ctomlins/testuniv_sort latest

  • version: 5.3.0
Latest release: almost 4 years ago - 9 downloads - 184 dependencies
ivistsukiok/binder-mdx-https-3a-2f-2fit1-2edg-2enii-2eac-2ejp-2fivis-2dmizuguchi-2f0309-2egit-0b677e f3f9facd9af55fcf04ca2b75cc5b5d2005c4620c

  • version: 7.23.1
Latest release: over 1 year ago - 11 downloads - 1,457 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg02-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dtsukioka-2fcp-5ftest-2egit-4d2c0f becdc72adea4103aa2c982164b26ee8b302e0b7d

  • version: 7.9.0
Latest release: about 2 years ago - 9 downloads - 1,892 dependencies
koki/landscaper pr-19

  • version: 7.32.3, 7.29.0
Latest release: 11 months ago - 288 downloads - 1,337 dependencies
ivistsukiok/binder-mdx-http-3a-2f-2fdg01-2edg-2ercos-2enii-2eac-2ejp-2fivis-2dmizuguchi-2fupdate-5ftasks-5frelated-5fto-5fmetadata-5fand-5fvalidation-2egit-956ab3 0834f4ec17dbb9f50eeb052ca0c194513a875c3c

  • version: 7.23.1
Latest release: over 1 year ago - 9 downloads - 1,457 dependencies