Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : reshape2

Explore the latest package usage data for reshape2 in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 1,305
Total downloads: 78,267,735

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 1.4.2
Latest release: over 8 years ago - 41,234,014 downloads - 951 dependencies
jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

  • version: 1.4.4
Latest release: over 1 year ago - 34,322,165 downloads - 2,728 dependencies
jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 1.4.4
Latest release: over 1 year ago - 2,394,534 downloads - 1,718 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 1.4.3
Latest release: over 6 years ago - 1,482,087 downloads - 498 dependencies
veupathdb/rserve 8.1.4

  • version: 1.4.4
Latest release: 4 months ago - 626,889 downloads - 550 dependencies
ccdlstaging/dr_downloaders 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 127,834 downloads - 1,028 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 1.4.2
Latest release: about 8 years ago - 115,446 downloads - 884 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.4.4
Latest release: almost 3 years ago - 103,038 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.4.4
Latest release: about 2 years ago - 95,633 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 94,460 downloads - 1,220 dependencies
rocker/ropensci 3.4.1

  • version: 1.4.3
Latest release: over 7 years ago - 88,724 downloads - 1,589 dependencies
ccdlstaging/dr_salmon 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 61,084 downloads - 916 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.4.4
Latest release: over 2 years ago - 54,822 downloads - 352 dependencies
nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

  • version: 1.4.4
Latest release: almost 4 years ago - 52,400 downloads - 309 dependencies
180a51c0/gh-action-buildapp latest

  • version: 1.4.4
Latest release: over 4 years ago - 56,914 downloads - 1,987 dependencies
nfcore/mag 1.2.0

  • version: 1.4.4
Latest release: almost 4 years ago - 38,626 downloads - 269 dependencies
tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

  • version: 1.4.4
Latest release: about 3 years ago - 32,915 downloads - 664 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 1.4.3
Latest release: over 5 years ago - 25,404 downloads - 417 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.4.4
Latest release: over 1 year ago - 25,819 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.4.4
Latest release: about 3 years ago - 19,985 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.4.4
Latest release: over 2 years ago - 14,641 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 1.45.8

  • version: 1.4.3
Latest release: over 1 year ago - 17,904 downloads - 894 dependencies
ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

  • version: 1.4.4
Latest release: 12 months ago - 13,653 downloads - 747 dependencies
vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

  • version: 1.4.4
Latest release: 10 months ago - 26,275 downloads - 1,231 dependencies
nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

  • version: 1.4.3
Latest release: almost 4 years ago - 10,515 downloads - 331 dependencies
biocontainers/assemblytics v1.0ds-1-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 9,378 downloads - 632 dependencies
rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

  • version: 1.4.3
Latest release: about 5 years ago - 12,710 downloads - 534 dependencies
biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 9,317 downloads - 689 dependencies
biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 8,473 downloads - 644 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 8,008 downloads - 831 dependencies
biocontainers/nanook v1.33dfsg-1-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 7,934 downloads - 733 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 7,520 downloads - 1,167 dependencies
biocontainers/roary v3.12.0dfsg-2-deb_cv1

  • version: 1.4.3
Latest release: over 5 years ago - 7,534 downloads - 1,110 dependencies
artemklevtsov/r-alpine 3.3.1

R docker images based on the alpine:latest

  • version: 1.4.3
Latest release: over 8 years ago - 7,422 downloads - 124 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.4.4
Latest release: over 2 years ago - 6,916 downloads - 12,259 dependencies
gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

  • version: 1.4.4
Latest release: over 3 years ago - 5,347 downloads - 2,109 dependencies
hylleraas/singleuser 53

  • version: 1.4.4
Latest release: about 1 year ago - 11,917 downloads - 2,614 dependencies
mesosphere/mesosphere-data-toolkit latest

  • version: 1.4.3
Latest release: about 6 years ago - 4,275 downloads - 1,270 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 1.4.3
Latest release: about 5 years ago - 3,562 downloads - 843 dependencies
ccdlstaging/dr_smasher 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 7,326 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.4.4
Latest release: about 4 years ago - 3,042 downloads - 1,044 dependencies
ocdr/dkube-datascience-rs-sk-cpu-multiuser v0.23.2

  • version: 1.4.4
Latest release: about 4 years ago - 4,052 downloads - 751 dependencies
ocdr/dkube-datascience-rs-tf-cpu v2.0.0

  • version: 1.4.4
Latest release: about 4 years ago - 3,600 downloads - 722 dependencies
ccdlstaging/dr_illumina 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 6,466 downloads - 893 dependencies
ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

  • version: 1.4.4
Latest release: about 4 years ago - 3,682 downloads - 747 dependencies
patroonorg/patroondeps latest

  • version: 1.4.4
Latest release: almost 2 years ago - 3,003 downloads - 1,677 dependencies
ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

  • version: 1.4.4
Latest release: 12 months ago - 3,508 downloads - 841 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 1.4.3
Latest release: about 5 years ago - 2,705 downloads - 591 dependencies
gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

  • version: 1.4.3
Latest release: about 4 years ago - 2,510 downloads - 2,536 dependencies
bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

  • version: 1.4.4
Latest release: over 3 years ago - 2,874 downloads - 1,920 dependencies
snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

  • version: 1.4.4
Latest release: over 3 years ago - 2,261 downloads - 2,866 dependencies
broadinstitute/terra-jupyter-gatk 0.0.13

  • version: 1.4.3
Latest release: almost 5 years ago - 2,359 downloads - 3,913 dependencies
mesosphere/mesosphere-jupyter-service latest

  • version: 1.4.3
Latest release: about 6 years ago - 2,273 downloads - 2,835 dependencies
nfcore/bcellmagic 1.2.0

A preliminary container for the bcellmagic pipeline

  • version: 1.4.4
Latest release: about 5 years ago - 2,656 downloads - 298 dependencies
alligatorcompany/acs-exasol 1.0.5

exasol docker image with additional checks

  • version: 1.4.4
Latest release: over 3 years ago - 2,092 downloads - 2,085 dependencies
araalinetworks/devproxy 0.9.91

  • version: 1.4.4
Latest release: almost 5 years ago - 2,361 downloads - 2,686 dependencies
dragonflyscience/niwaverse 2020-08-11

  • version: 1.4.4
Latest release: over 4 years ago - 1,791 downloads - 1,445 dependencies
ccdlstaging/dr_compendia 1.45.8

  • version: 1.4.4
Latest release: over 1 year ago - 4,957 downloads - 877 dependencies
rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

  • version: 1.4.3
Latest release: about 5 years ago - 1,874 downloads - 581 dependencies
gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

  • version: 1.4.4
Latest release: over 3 years ago - 1,342 downloads - 1,885 dependencies
dceoy/r-tidyverse latest

R with tidyverse

  • version: 1.4.4
Latest release: about 2 years ago - 1,321 downloads - 615 dependencies
dragonflyscience/dragonverse-18.04 latest

  • version: 1.4.4
Latest release: over 2 years ago - 1,573 downloads - 1,440 dependencies
afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

  • version: 1.4.4
Latest release: almost 2 years ago - 1,959 downloads - 702 dependencies
nfcore/neutronstar 1.0.0

A Docker Container for nf-core/neutronstar

  • version: 1.4.3
Latest release: about 5 years ago - 1,323 downloads - 253 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 1.4.3
Latest release: about 7 years ago - 1,075 downloads - 1,383 dependencies
kbase/metrics latest

  • version: 1.4.3
Latest release: over 3 years ago - 1,048 downloads - 973 dependencies
ocdr/dkube-datascience-rs-tf-gpu v2.0.0

  • version: 1.4.4
Latest release: about 4 years ago - 1,111 downloads - 1,011 dependencies
nfcore/airrflowreport dev

  • version: 1.4.4
Latest release: almost 2 years ago - 1,010 downloads - 409 dependencies
dragonflyscience/sharknado 2024-06-10

  • version: 1.4.4
Latest release: 8 months ago - 1,807 downloads - 2,516 dependencies
recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

  • version: 1.4.4
Latest release: almost 4 years ago - 1,184 downloads - 524 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: 1.4.3
Latest release: over 6 years ago - 1,002 downloads - 366 dependencies
kbase/errorlogging develop

  • version: 1.4.3
Latest release: about 4 years ago - 979 downloads - 973 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.4.4
Latest release: over 2 years ago - 1,210 downloads - 654 dependencies
afcai2c/python-r-ai latest

Image with Python and R packages

  • version: 1.4.4
Latest release: over 2 years ago - 920 downloads - 851 dependencies
gesiscss/binder-lmartinoty-2dlmartinoty-e3b0bd c626ad4bba1c566a8af5d745f4386d02e9fe9b44

  • version: 1.4.3
Latest release: about 4 years ago - 845 downloads - 2,085 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 1.4.3
Latest release: over 4 years ago - 38,651 downloads - 842 dependencies
nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

  • version: 1.4.4
Latest release: over 4 years ago - 34,728 downloads - 354 dependencies
prismcmap/reports v0.3.0

  • version: 1.4.4
Latest release: over 1 year ago - 19,203 downloads - 1,108 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 1.4.3
Latest release: over 4 years ago - 10,133 downloads - 1,006 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.4.4
Latest release: about 4 years ago - 9,714 downloads - 340 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 1.4.3
Latest release: over 4 years ago - 7,695 downloads - 1,007 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.4.4
Latest release: almost 4 years ago - 7,770 downloads - 423 dependencies
nfcore/proteomicslfq 1.0.0

A Docker Container for label free quantification for proteomics data.

  • version: 1.4.4
Latest release: over 4 years ago - 5,517 downloads - 1,124 dependencies
nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

  • version: 1.4.4
Latest release: almost 4 years ago - 7,092 downloads - 488 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 1.4.3
Latest release: almost 5 years ago - 4,297 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 1.4.3
Latest release: over 4 years ago - 3,411 downloads - 842 dependencies
intelliseqngs/task_vcf-uniq 1.0.0

  • version: 1.4.3
Latest release: over 4 years ago - 2,284 downloads - 806 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.4.3
Latest release: almost 6 years ago - 1,293 downloads - 9,716 dependencies
lucifer001/custom-rs-tf-multiuser gpu

  • version: 1.4.4
Latest release: almost 4 years ago - 999 downloads - 807 dependencies