qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

ocdr/ds-apps 1.0.43

btrspg/r-env cache

luisas/feelnc 0.1.1

koki/urchin_workflow_seurat 20250213

koki/tensor-projects-parasite 20220819

vanessa/seurat latest

genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

mlepetit/ranalysis 3.3.4

aoliver44/nutrition_tools v08042025

Docker image for running helpful scripts, especially related to ML analyses in nutrition

gnwanne/atac latest

iandennismiller/analyzer latest

Contains Python, Gephi, and RStudio Desktop. Based on /r/iandennismiller/vnc-desktop

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

adriansegura99/geneci_infer-network_meomi 4.0.0

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

koki/tensor-project-parasite 20211013

nciccbr/ccbr_r_4.3.0 v1

evolomicsmbbt/rna_seq latest

nathanprovin/cellcom 1.2.2

matzieb/shiny-4.0.3-seurat4-spatial latest

afcai2c/r-studio-geo latest

rgregstacey/seurat_image 2.1

gesiscss/binder-tlbbd-2dspring2018-2dlab-5f10-b89db5 85cb00a8af28ec9af53e79e947b0f4ff648544a6

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

recetox/xmsanalyzer 2.0.6.1-recetox1

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

qdidiscoveryservices/seurat_cell_annotation latest

tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

koki/velocytor 20221015

ghhenry/curio-seeker-pipeline latest

dkendy/analise_credito_base v1

brianyee/cropseq-essentials 1.0.0

dkendy/r_base_calculo latest

commander121/rmarkdown 4.4.0d-b4

koki/bindsc 20220609

uabbds/zebrafish_telencephalon_atlas_app 1.0.0

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mshriver01/share_task_seurat latest

mfsentma/atacseq latest

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

alexthiery/archr 3.1

avi156/rocker-binder-upd 4.2.2

nilesh0404/st_visualizer m1_0.1.2

alexthiery/schelper seurat-schelper-0.3.5

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

genular/pandora 2.0.0

PANDORA - https://pandora.atomic-lab.org

uvarc/rstudio tam5xe

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

jafoltz/sc_python 8

daltoncp/rstudio_celeganssinglecell 4.2_12

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

dpraveen511/spot spot_ec2

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

nikhil166/cellxgene_vip_docker v2.4

kaizhang/scatac-bench 0.2.1

gyusikhwang/tgs v1

pennsive/mstools 4.2-amd64

granatumx/gbox-cellid-sctype 1.0.2

amhe4269/hcp-icafix-base 1.06.15

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

mshriver01/share_task_archr latest

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

dzhakparov/geneselectr-image latest

mknudson/share_task_cell_annotation mei-cell-annotation

vgonzenbach/rstudio 4.2

mikesiwenwu/eversus_benchmarking v7_s3test

mpaltsai/biotextquest_top2vec 27122022

brusconi/seurat new

stormgod/deepmaps-cpu latest

lizzyr/pseudo_ko 1.0.3

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

ucigenomics/cellchatnotebook 2.1.2

nfancy/scflow 0.7.4

qdidiscoveryservices/pseudobulk 2.0.2

cliu97/r4.3_seurat latest

payne6861/seurat v1.0.0

alexthiery/archr_seurat_signac_mega 3.2

msgao/deseq2 latest

mengchen18/xcmsviewer_process latest

bixbeta/pavian v1

zwcdocker/seurat latest

r2bit/bit-edu-server latest

bit-edu is an open-source scientific and technical education environment built on Docker.

yosuketanigawa/rstudio_yt latest

andrewsg/archr dev

sheddn/bioinformatics-tools latest

elynrfw/gerald-test latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

luisas/rdeanalysis latest

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3