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Package Usage : cran : futile.options

Explore the latest package usage data for futile.options in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 630
Total downloads: 2,762,114

More details on packages.ecosyste.ms - JSON

veupathdb/rserve 8.2.2

  • version: 1.0.1
Latest release: 5 months ago - 627,414 downloads - 550 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.0.1
Latest release: over 3 years ago - 103,038 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.0.1
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.0.1
Latest release: almost 2 years ago - 94,465 downloads - 1,220 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.0.1
Latest release: about 4 years ago - 95,290 downloads - 297 dependencies
rocker/ropensci 3.4.1

  • version: 1.0.1
Latest release: almost 8 years ago - 88,799 downloads - 1,589 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.0.1
Latest release: about 3 years ago - 54,930 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 1.0.0
Latest release: over 5 years ago - 52,152 downloads - 432 dependencies
nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

  • version: 1.0.1
Latest release: over 4 years ago - 53,383 downloads - 309 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 1.0.1
Latest release: 4 months ago - 48,015 downloads - 738 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.0.1
Latest release: almost 2 years ago - 28,089 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.0.1
Latest release: over 3 years ago - 19,986 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.0.1
Latest release: about 3 years ago - 17,819 downloads - 11,684 dependencies
nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

  • version: 1.0.1
Latest release: over 4 years ago - 10,699 downloads - 331 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.0.1
Latest release: about 3 years ago - 9,814 downloads - 12,259 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.0.1
Latest release: almost 4 years ago - 3,681 downloads - 1,218 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.0.1
Latest release: over 4 years ago - 3,042 downloads - 1,044 dependencies
patroonorg/patroondeps latest

  • version: 1.0.1
Latest release: over 2 years ago - 3,195 downloads - 1,677 dependencies
dhspence/docker-biscuit latest

  • version: 1.0.1
Latest release: over 6 years ago - 1,963 downloads - 807 dependencies
nfcore/airrflowreport dev

  • version: 1.0.1
Latest release: over 2 years ago - 1,011 downloads - 409 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: 1.0.0
Latest release: about 7 years ago - 1,005 downloads - 366 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.0.1
Latest release: almost 3 years ago - 1,269 downloads - 654 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.0.1
Latest release: about 3 years ago - 1,072,589 downloads - 607 dependencies
nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

  • version: 1.0.1
Latest release: about 5 years ago - 37,553 downloads - 354 dependencies
nfcore/hic 1.3.0

A docker container for the nf-core/hic pipeline.

  • version: 1.0.1
Latest release: about 4 years ago - 15,438 downloads - 257 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.0.1
Latest release: over 4 years ago - 9,754 downloads - 340 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.0.1
Latest release: over 4 years ago - 7,851 downloads - 423 dependencies
nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

  • version: 1.0.1
Latest release: about 4 years ago - 7,136 downloads - 488 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.0.1
Latest release: over 6 years ago - 1,359 downloads - 9,716 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 1.0.1
Latest release: almost 7 years ago - 816 downloads - 2,000 dependencies
prismcmap/depmap_versions v0.1.0

  • version: 1.0.1
Latest release: over 3 years ago - 2,833 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.0.1
Latest release: over 6 years ago - 723 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.0.1
Latest release: over 6 years ago - 1,192 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.0.1
Latest release: over 6 years ago - 1,196 downloads - 413 dependencies
seglh/exomedepth f4716ad

  • version: 1.0.1
Latest release: over 1 year ago - 1,435 downloads - 548 dependencies
gene110/nipt_report latest

  • version: 1.0.1
Latest release: about 4 years ago - 826 downloads - 676 dependencies
gesiscss/binder-arnim-2dstmdemo-166b8a 3c29f7eaee928ba308137abb0effe5998f8ffa52

  • version: 1.0.1
Latest release: over 5 years ago - 484 downloads - 2,089 dependencies
prismcmap/drc-module v0.0.1

  • version: 1.0.1
Latest release: over 2 years ago - 597 downloads - 647 dependencies
veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 1.0.1
Latest release: about 1 year ago - 959 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 1.0.1
Latest release: over 6 years ago - 789 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.0.1
Latest release: about 3 years ago - 1,640 downloads - 1,382 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.0.1
Latest release: over 1 year ago - 3,981 downloads - 1,464 dependencies
prismcmap/norm-module v0.0.1

  • version: 1.0.1
Latest release: over 3 years ago - 430 downloads - 633 dependencies
dhspence/docker-basestation latest

  • version: 1.0.1
Latest release: over 6 years ago - 347 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.0.1
Latest release: over 3 years ago - 343 downloads - 1,375 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 1.0.1
Latest release: about 7 years ago - 364 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 1.0.1
Latest release: almost 5 years ago - 392 downloads - 1,127 dependencies
koki/pagoda latest

  • version: 1.0.0
Latest release: almost 8 years ago - 270 downloads - 390 dependencies
biocontainers/bioconductor-rsamtools v1.26.1-2b1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 552 downloads - 416 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 543 downloads - 576 dependencies
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 545 downloads - 430 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 545 downloads - 457 dependencies
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 531 downloads - 498 dependencies
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 529 downloads - 431 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 1.0.1
Latest release: almost 3 years ago - 455 downloads - 1,641 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 1.0.1
Latest release: over 2 years ago - 276 downloads - 227 dependencies
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 526 downloads - 423 dependencies
biocontainers/bioconductor-biocparallel v1.8.1-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 525 downloads - 396 dependencies
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 527 downloads - 568 dependencies
koki/sctensor-experiments 20220208

  • version: 1.0.1
Latest release: over 3 years ago - 259 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 1.0.1
Latest release: almost 5 years ago - 218 downloads - 452 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.0.1
Latest release: over 3 years ago - 426 downloads - 1,716 dependencies
recetox/ramclustr 1.1.0-recetox0

  • version: 1.0.1
Latest release: over 4 years ago - 199 downloads - 593 dependencies
koki/biocdev 20230818

  • version: 1.0.1
Latest release: almost 2 years ago - 301 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 1.0.1
Latest release: over 2 years ago - 268 downloads - 766 dependencies
prismcmap/sushi v0.0.2

  • version: 1.0.1
Latest release: over 3 years ago - 712 downloads - 723 dependencies
ctomlins/minion_qc latest

  • version: 1.0.1
Latest release: about 7 years ago - 191 downloads - 654 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.0.1
Latest release: almost 4 years ago - 1,318 downloads - 693 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.0.1
Latest release: over 2 years ago - 198 downloads - 962 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 1.0.0
Latest release: over 7 years ago - 395 downloads - 865 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 184 downloads - 427 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 163 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.0.1
Latest release: almost 7 years ago - 531 downloads - 1,077 dependencies
evolbioinfo/minionqc v1.4.1

Quality control for MinION sequencing data

  • version: 1.0.1
Latest release: about 6 years ago - 163 downloads - 500 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.0.0
Latest release: over 7 years ago - 159 downloads - 633 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 167 downloads - 523 dependencies
broadinstitute/pcawg_full 7

  • version: 1.0.0
Latest release: almost 8 years ago - 303 downloads - 889 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.0.0
Latest release: about 7 years ago - 146 downloads - 453 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.0.1
Latest release: over 6 years ago - 237 downloads - 2,095 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.0.1
Latest release: about 7 years ago - 357 downloads - 9,302 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.0.1
Latest release: over 6 years ago - 180 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 1.0.1
Latest release: about 4 years ago - 126 downloads - 1,271 dependencies
peterdjames/r_base_with_packs_incl_rkdb r-base

  • version: 1.0.1
Latest release: over 2 years ago - 1,273 downloads - 1,721 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.0.1
Latest release: almost 4 years ago - 169 downloads - 2,087 dependencies
atttilacs/dsp_geomxtools latest

  • version: 1.0.1
Latest release: over 2 years ago - 114 downloads - 871 dependencies
koki/reductdims latest

  • version: 1.0.1
Latest release: over 3 years ago - 146 downloads - 1,081 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.0.1
Latest release: over 4 years ago - 114 downloads - 1,468 dependencies
atttilacs/seurat_big latest

  • version: 1.0.1
Latest release: over 2 years ago - 495 downloads - 997 dependencies
broadinstitute/pcawg_tokens latest

  • version: 1.0.0
Latest release: almost 9 years ago - 166 downloads - 1,472 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.0.1
Latest release: almost 7 years ago - 230 downloads - 9,486 dependencies
jafoltz/scclassify latest

  • version: 1.0.1
Latest release: over 2 years ago - 94 downloads - 1,079 dependencies
crukmi/mesa main

  • version: 1.0.1
Latest release: almost 3 years ago - 162 downloads - 1,326 dependencies