robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

atingupta2005/rocker_tidyverse latest

btrspg/r-env cache

ocdr/ds-apps 1.0.43

koki/urchin_workflow_seurat 20250213

vanessa/seurat latest

genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

mlepetit/ranalysis 3.3.4

weizhoujp/rchtc 4.3.0

gnwanne/atac latest

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

gesiscss/binder-darribas-2dgds-5fucm19-a1b96e 27cbafcf6a865910a18b835a4efc47e9fd532696

crukcibioinformatics/sequencingbase 9.3.4

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

rocker/ropensci 3.4.1

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

nciccbr/ccbr_r_4.3.0 v1

evolomicsmbbt/rna_seq latest

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

gesiscss/binder-wlandau-2dlearndrake-4eaf31 37504de3434ab3b0fedf8680a95efeeb605bef4d

intiquan/iqdesktop latest

matzieb/shiny-4.0.3-seurat4-spatial latest

rgregstacey/seurat_image 2.1

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

nuest/altrnative-paper latest

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

qdidiscoveryservices/seurat_cell_annotation latest

tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

koki/velocytor 20221015

gesiscss/binder-ajstewartlang-2dbinder-5fdemo-a82af5 b2c39fc6050f1879a6707e4a703da12f7c935b1f

ghhenry/curio-seeker-pipeline latest

alanocallaghan/high-dimensional-stats-r latest

brianyee/cropseq-essentials 1.0.0

commander121/rmarkdown 4.4.0d-b4

koki/bindsc 20220609

uabbds/zebrafish_telencephalon_atlas_app 1.0.0

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mshriver01/share_task_seurat latest

tercen/faust_operator 0.1.4

mfsentma/atacseq latest

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

alexthiery/archr 3.1

smemane20/error_thres_amd_64 latest

avi156/rocker-binder-upd 4.2.2

denklewer/linseedv2 latest

nilesh0404/st_visualizer m1_0.1.2

alexthiery/schelper seurat-schelper-0.3.5

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

genular/pandora 2.0.0

PANDORA - https://pandora.atomic-lab.org

uvarc/rstudio tam5xe

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

felipexgonzalez/am-2023-amd64 latest

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

mkvasnicka/acc-clusters latest

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

dpraveen511/spot spot_ec2

yshen99/mssl 0.1.0

anlitiks/ra_takeda latest

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

nikhil166/cellxgene_vip_docker v2.4

kaizhang/scatac-bench 0.2.1

rayho123/hublti 20240523

用于Jupyterhub教学的环境

gyusikhwang/tgs v1

alexsickler/open-pedcan latest

granatumx/gbox-cellid-sctype 1.0.2

emersonchao/dsc180b latest

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

tercen/normalise_cytof_operator 0.2.3

mshriver01/share_task_archr latest

brodriguesco/ess_dev_env main-5b04c9cb51fc15924992f449ca69ae35eac7b7df

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

dzhakparov/geneselectr-image latest

mknudson/share_task_cell_annotation mei-cell-annotation

qdidiscoveryservices/flower v3

mikesiwenwu/eversus_benchmarking v7_s3test

dragonflyscience/vtnz 2023-09-05

brusconi/seurat new

stormgod/deepmaps-cpu latest

lizzyr/pseudo_ko 1.0.3

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

tercen/tercen_studio_flowsuite 0.0.1

apollodorus/polyglot v1

fgualdr/envimpulse latest

ucigenomics/cellchatnotebook 2.1.2

nfancy/scflow 0.7.4

qdidiscoveryservices/pseudobulk 2.0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9