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Package Usage : cran : rhdf5

Explore the latest package usage data for rhdf5 in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 317
Total downloads: 1,087,519
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 2.42.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.38.1
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 2.46.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 2.42.1
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
inseefrlab/travail-collaboratif 0.1.0

  • version: 2.42.0
Latest release: about 3 years ago - 239 downloads - 1,119 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.36.0
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
weizhoujp/rchtc 4.3.0

  • version: 2.44.0
Latest release: over 2 years ago - 141 downloads - 738 dependencies
globusgenomics/picrust 1.0

  • version: 2.38.1
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 2.40.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
gesiscss/binder-darribas-2dgds-5fucm19-a1b96e 27cbafcf6a865910a18b835a4efc47e9fd532696

  • version: 2.24.0
Latest release: about 6 years ago - 81 downloads - 1,567 dependencies
rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 2.46.1
Latest release: over 1 year ago - 107,789 downloads - 2,239 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.50.2
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.42.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
rocker/ropensci 3.4.1

  • version: 2.24.0
Latest release: over 8 years ago - 88,870 downloads - 1,589 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 2.24.0
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 2.44.0
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.44.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
gesiscss/binder-wlandau-2dlearndrake-4eaf31 37504de3434ab3b0fedf8680a95efeeb605bef4d

  • version: 2.30.1
Latest release: almost 6 years ago - 123 downloads - 447 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 2.34.0
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
gesiscss/binder-r2d-g5b5b759-2i2c-2dorg-2dutoronto-2dr-2dimage-f9fba3 5e7aea3c30ff4157e2fe53e17b295f2e719b97a3

  • version: 2.46.1
Latest release: over 1 year ago - 31 downloads - 2,291 dependencies
nuest/altrnative-paper latest

  • version: 2.30.0
Latest release: almost 6 years ago - 47 downloads - 1,178 dependencies
js2264/fourdndata 1.1.0

  • version: 2.45.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 2.42.0
Latest release: about 3 years ago - 75 downloads - 699 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 2.24.0
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 2.30.1
Latest release: over 2 years ago - 37 downloads - 725 dependencies
gesiscss/binder-ajstewartlang-2dbinder-5fdemo-a82af5 b2c39fc6050f1879a6707e4a703da12f7c935b1f

  • version: 2.30.0
Latest release: about 6 years ago - 33 downloads - 1,176 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.42.1
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 2.38.1
Latest release: about 3 years ago - 215 downloads - 962 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.43.0
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.39.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
chgyi/bio 3.5.1

  • version: 2.24.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
pieratio/shinyc19 latest

  • version: 2.42.0
Latest release: almost 3 years ago - 93 downloads - 1,130 dependencies
dhspence/docker-rnaseq latest

  • version: 2.22.0
Latest release: almost 8 years ago - 210 downloads - 665 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.42.1
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 2.34.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
mshriver01/share_task_seurat latest

  • version: 2.38.1
Latest release: over 2 years ago - 394 downloads - 1,637 dependencies
nuest/reproducible-research-at-giscience latest

  • version: 2.30.1
Latest release: over 4 years ago - 179 downloads - 1,132 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 2.42.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 2.45.0
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
alexthiery/archr 3.1

  • version: 2.38.1
Latest release: over 2 years ago - 238 downloads - 819 dependencies
fallingstar10/hbsigrocker latest

  • version: 2.44.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
dhspence/docker-manta 1.5.0

  • version: 2.24.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 2.42.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
inseefrlab/onyxia-r ds-r4.1.2-gpu-2022.09.08

A R environment with a collection of standard data science packages.

  • version: 2.40.0
Latest release: over 3 years ago - 315 downloads - 2,202 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 2.36.0
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 2.44.0
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
luisas/rde latest

  • version: 2.30.1
Latest release: about 5 years ago - 66 downloads - 549 dependencies
uvarc/rstudio tam5xe

  • version: 2.44.0
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
atttilacs/dsp_geomxtools latest

  • version: 2.38.1
Latest release: about 3 years ago - 114 downloads - 871 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 2.42.1
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 2.34.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 2.38.1
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
andrewatmp/qiime_unzip latest

  • version: 2.42.0
Latest release: over 2 years ago - 151 downloads - 598 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 2.44.0
Latest release: over 2 years ago - 293 downloads - 529 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 2.30.1
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 2.42.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 2.30.1
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dhspence/docker-rstudio-python latest

  • version: 2.42.0
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
crpeters/r-methylkit 4.2.1

  • version: 2.42.0
Latest release: almost 3 years ago - 80 downloads - 383 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 2.42.0
Latest release: about 3 years ago - 20 downloads - 1,935 dependencies
stefanucciluca/tregopathies latest

  • version: 2.42.1
Latest release: over 2 years ago - 91 downloads - 488 dependencies
biohpc/scrna2023 2.0.2

  • version: 2.42.0
Latest release: over 1 year ago - 216 downloads - 1,233 dependencies
biocorecrg/microbiomeprofile 0.4

  • version: 2.38.1
Latest release: about 2 years ago - 106 downloads - 267 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 2.42.1
Latest release: 8 months ago - 2,648 downloads - 757 dependencies
gesiscss/binder-r2d-g5b5b759-krisrs1128-2dmbtransfer-5fdemo-dffea6 8280cdc5b2cd4819736eeb5d37151f18aa521d51

  • version: 2.44.0
Latest release: over 1 year ago - 142 downloads - 1,437 dependencies
gesiscss/binder-r2d-g5b5b759-ropensci-2druodk-43df84 94345cd4f4d31472feca85aa4bff7761cd359341

  • version: 2.38.1
Latest release: about 1 year ago - 206 downloads - 1,957 dependencies
nakamichi/r-latex geospatial-4.2.2

  • version: 2.42.0
Latest release: about 3 years ago - 33 downloads - 381 dependencies
pennsive/mstools 4.2-amd64

  • version: 2.42.0
Latest release: almost 3 years ago - 74 downloads - 303 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 2.44.0
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
emersonchao/dsc180b latest

  • version: 2.42.0
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
micedre/onyxia-r-datascience r4.4.2-2025.05.05

  • version: 2.44.0
Latest release: 9 months ago - 879 downloads - 2,211 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 2.30.1
Latest release: over 2 years ago - 74 downloads - 383 dependencies
mshriver01/share_task_archr latest

  • version: 2.38.1
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
proteogenomics/missing-value-imputation latest

  • version: 2.40.0
Latest release: almost 3 years ago - 205 downloads - 215 dependencies
nefsc/rstudio 4.2.2

  • version: 2.42.0
Latest release: about 3 years ago - 17 downloads - 630 dependencies
evafastpf/commot 0.1

  • version: 2.30.1
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 2.38.1
Latest release: over 2 years ago - 158 downloads - 316 dependencies
vgonzenbach/rstudio 4.2

  • version: 2.40.0
Latest release: about 3 years ago - 94 downloads - 528 dependencies
philipp02/pathway v1

  • version: 2.43.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 2.44.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
thomasfaria/dt-rn-chapitre1 latest

  • version: 2.40.0
Latest release: about 3 years ago - 27 downloads - 1,704 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 2.44.0
Latest release: over 2 years ago - 26 downloads - 352 dependencies
am5747/methylation latest

  • version: 2.42.0
Latest release: about 3 years ago - 32 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 2.40.0
Latest release: about 3 years ago - 33 downloads - 341 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 2.44.0
Latest release: almost 2 years ago - 807 downloads - 853 dependencies
apollodorus/polyglot v1

  • version: 2.42.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
nfancy/scflow 0.7.4

  • version: 2.42.1
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
inseefrlab/formation-r-lissage-spatial latest

  • version: 2.40.0
Latest release: over 3 years ago - 86 downloads - 1,456 dependencies
maitner/example latest

  • version: 2.42.0
Latest release: about 3 years ago - 19 downloads - 418 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 2.42.0, 2.44.0
Latest release: 3 months ago - 1,863 downloads - 3,823 dependencies
fluentin55/singlecell_docker 1.2

  • version: 2.42.0
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
ucbscf/stat20-course-materials latest

  • version: 2.42.0
Latest release: almost 3 years ago - 84 downloads - 375 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 2.38.1
Latest release: over 2 years ago - 142 downloads - 441 dependencies
ramanmagar/ufc-app latest

First App

  • version: 2.42.0
Latest release: almost 3 years ago - 92 downloads - 339 dependencies
mhettich0years/r-images v1.1.2

  • version: 2.42.0
Latest release: about 3 years ago - 143 downloads - 334 dependencies
cblefari/onyxia-rstudio r4.4.2-2025.11.06

  • version: 2.38.1
Latest release: 2 months ago - 3,334 downloads - 1,607 dependencies
inseefrlab/onyxia-r-datascience r4.4.3-2025.09.01

  • version: 2.50.2
Latest release: 5 months ago - 13,315 downloads - 1,215 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 2.40.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
broadcptacdev/activedriver latest

  • version: 2.30.1
Latest release: almost 3 years ago - 128 downloads - 720 dependencies