Package Usage : cran : S4Vectors
Explore the latest package usage data for S4Vectors in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 773
Total downloads: 3,893,911
More details on packages.ecosyste.ms - JSON
rocker/geospatial 4.4.2
Docker-based Geospatial toolkit for R, built on versioned Rocker images
- version: 0.40.2
veupathdb/rserve 8.2.2
- version: 0.36.2
ccdlstaging/dr_downloaders 1.45.8
- version: 0.16.0
broadinstitute/gtex_eqtl V10
GTEx Consortium: eQTL pipeline based on FastQTL
- version: 0.16.0
broadinstitute/terra-jupyter-aou 2.1.13
- version: 0.32.3, 0.36.1
ccdlstaging/dr_affymetrix 1.45.8
- version: 0.16.0
rocker/binder 4.4.1
Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers
- version: 0.40.2
nfcore/methylseq 1.6.1
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 0.30.0
rocker/ropensci 3.4.1
- version: 0.18.1
ccdlstaging/dr_salmon 1.45.8
- version: 0.16.0
nfcore/atacseq 1.2.2
A Docker container for the nf-core/atacseq pipeline.
- version: 0.24.0
biocontainers/control-freec v11.5_cv1
- version: 0.8.11
nfcore/chipseq 1.2.2
A docker image for nf-core/chipseq
- version: 0.26.0
dhspence/docker-basespace_chromoseq latest
- version: 0.22.0
nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
- version: 0.28.1
rocker/ml-verse 4.4.1
- version: 0.40.2
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 0.38.1
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 0.24.4
mirekphd/ml-cpu-r36-rs-cust latest
- version: 0.26.1
ccdlstaging/dr_no_op 1.45.8
- version: 0.16.0
nfcore/ampliseq 1.2.0
A Docker image for nf-core/ampliseq.
- version: 0.20.1
mirekphd/ml-cpu-r36-base latest
- version: 0.26.1
biocontainers/isee-galaxy v3.13_cv1.0.0
- version: 0.31.0
ccdlstaging/dr_smasher 1.45.8
- version: 0.16.0
qdidiscoveryservices/ms_pipeline latest
- version: 0.28.1
ccdlstaging/dr_illumina 1.45.8
- version: 0.16.0
patroonorg/patroondeps latest
- version: 0.36.2
dhspence/docker-biscuit latest
- version: 0.18.3
ccdlstaging/dr_compendia 1.45.8
- version: 0.16.0
nfcore/airrflowreport dev
- version: 0.36.0
biocontainers/ipo develop
A Tool for automated Optimization of XCMS Parameters
- version: 0.16.0
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.
- version: 0.24.0
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 0.28.1
nfcore/slamseq 1.0.0
A docker image for nf-core/slamseq
- version: 0.20.1
nfcore/hic 1.3.0
A docker container for the nf-core/hic pipeline.
- version: 0.26.0
nfcore/nanoseq 1.1.0
Nanopore demultiplexing, QC and alignment pipeline
- version: 0.28.0
nfcore/scrnaseq 1.1.0
A Docker Container for the nf-core/scrnaseq pipeline.
- version: 0.24.0
hoonbiolab/cellranger v1.0
- version: 0.24.4
mirekphd/ml-cpu-r35-rs 20190201
- version: 0.20.1, 0.18.3
veitveit/isolabeledprotocol latest
Discontinued, see github.com/ProtProtocols/IsoProt for updates
- version: 0.19.19
prismcmap/depmap_versions v0.1.0
- version: 0.28.1
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 0.18.3
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 0.18.3
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 0.18.3
seglh/exomedepth f4716ad
- version: 0.34.0
gene110/nipt_report latest
- version: 0.16.0
prismcmap/drc-module v0.0.1
- version: 0.28.1
veitveit/vsclust release-1.3.2
For more details, see https://bitbucket.org/veitveit/vsclust
- version: 0.36.2
dhspence/docker-sicer latest
- version: 0.18.3
qdidiscoveryservices/limma-voom 4.2.0
- version: 0.34.0
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 0.32.4
prismcmap/norm-module v0.0.1
- version: 0.28.1
dhspence/docker-basestation latest
- version: 0.18.3
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 0.26.1
veitveit/complexbrowser release-1.6
- version: 0.36.0, 0.40.2
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0
- version: 0.36.0
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 0.18.3
dhspence/docker-dss latest
- version: 0.24.3
hoonbiolab/align_dna v1.3
- version: 0.24.4
tercen/flowsom 0.2.3
- version: 0.28.1
biocontainers/bioconductor-rsamtools v1.26.1-2b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-iranges v2.8.1-1b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-genomicranges v1.26.2-1b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-biomart v2.30.0-1-deb_cv1
- version: 0.12.1
tercen/runtime-flowsuite 3.15-4
- version: 0.34.0
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: 0.30.0
dhspence/docker-ichor latest
- version: 0.18.3
biocontainers/bioconductor-annotate v1.52.1dfsg-1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-go.db v3.4.0-1-deb_cv1
- version: 0.12.1
biocontainers/bioconductor-geneplotter v1.52.0-2-deb_cv1
- version: 0.12.1
koki/sctensor-experiments 20220208
- version: 0.32.3
evolbioinfo/deseq2 v1.28.1
- version: 0.26.1
qdidiscoveryservices/scrna_downstream 1.1
- version: 0.30.2
recetox/ramclustr 1.1.0-recetox0
- version: 0.26.1
koki/biocdev 20230818
- version: 0.39.1
anand7899/rmarkdown latest
- version: 0.36.0
prismcmap/sushi v0.0.2
- version: 0.28.1