Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : ggtree

Explore the latest package usage data for ggtree in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 89
Total downloads: 27,970

More details on packages.ecosyste.ms - JSON

mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 3.8.0
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
nfcore/airrflowreport dev

  • version: 3.6.0
Latest release: over 1 year ago - 994 downloads - 409 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 3.6.2
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
bactopia/tools-pirate 1.7.1

  • version: 2.4.0
Latest release: over 3 years ago - 539 downloads - 285 dependencies
koki/sctensor-experiments 20220208

  • version: 3.2.1
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
koki/biocdev 20230818

  • version: 3.9.1
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

  • version: 3.6.2
Latest release: almost 2 years ago - 169 downloads - 451 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 3.1.6
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
crukmi/mesa main

  • version: 3.5.3
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 3.2.1
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 3.6.2
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
crukmi/mesa_dependencies latest

  • version: 3.6.2
Latest release: over 1 year ago - 63 downloads - 1,393 dependencies
veitveit/coexpresso latest

  • version: 3.2.1
Latest release: over 2 years ago - 39 downloads - 1,733 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 3.6.0
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 3.9.1
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
kisudsoe/r-base latest

  • version: 3.6.2
Latest release: over 1 year ago - 83 downloads - 1,107 dependencies
viascientific/rstudio-app 1.0

  • version: 3.6.2
Latest release: over 1 year ago - 35 downloads - 1,074 dependencies
albertea/numbat_light 02

  • version: 3.6.2
Latest release: over 1 year ago - 42 downloads - 301 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 3.6.0
Latest release: almost 2 years ago - 13 downloads - 598 dependencies
denglab/vpfkit_base latest

  • version: 3.6.2
Latest release: over 1 year ago - 13 downloads - 1,089 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 3.8.2
Latest release: about 1 year ago - 33 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 3.6.0
Latest release: almost 2 years ago - 10 downloads - 598 dependencies
stormgod/deepmaps-cpu latest

  • version: 3.6.2
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
tamaraperteghella/r4_hormonit latest

  • version: 3.2.1
Latest release: over 1 year ago - 13 downloads - 1,528 dependencies
gmillot/immcantation_v1.1 gitlab_v10.0

  • version: 2.4.2
Latest release: over 1 year ago - 13 downloads - 1,438 dependencies
weishwu/chipseeker 1.34.1

  • version: 3.6.2
Latest release: over 1 year ago - 34 downloads - 423 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.1 gitlab_v9.7

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.7

  • version: 3.2.1
Latest release: almost 2 years ago - 24 downloads - 927 dependencies
andyvs/testimage 3.0

  • version: 3.6.0
Latest release: over 1 year ago - 11 downloads - 376 dependencies
viascientific/deseq2-docker 2.0

  • version: 3.6.2, 3.6.0
Latest release: over 1 year ago - 36 downloads - 375 dependencies
13883956158/shinyproxy-r 4.2.2

  • version: 3.6.2
Latest release: almost 2 years ago - 8 downloads - 312 dependencies
payne6861/clutserprofiler v1.0.0

  • version: 3.7.1.002
Latest release: almost 2 years ago - 8 downloads - 1,793 dependencies
compbiocore/dscov_sct 20221201

  • version: 3.6.2
Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 3.6.2
Latest release: over 1 year ago - 8 downloads - 1,038 dependencies
jenfisher7/rstudio_sbae latest

  • version: 3.6.2
Latest release: almost 2 years ago - 8 downloads - 1,604 dependencies
shl198/rna_ppl latest

  • version: 3.4.0
Latest release: almost 2 years ago - 20 downloads - 2,099 dependencies
payne6861/stereonote_non_conda_clusterprofiler_enrichplot v1.0.1

stereonote_non_conda_clusterprofiler_enrichplot

  • version: 3.7.1.002
Latest release: almost 2 years ago - 8 downloads - 1,689 dependencies
firriver/crvs latest

  • version: 3.7.1.003
Latest release: over 1 year ago - 8 downloads - 1,490 dependencies
mfsentma/rna latest

  • version: 3.2.1
Latest release: over 1 year ago - 7 downloads - 807 dependencies
mercury/nf_qc_scrna v2

  • version: 2.4.2
Latest release: over 1 year ago - 10 downloads - 548 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.2 gitlab_v9.8

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.8

  • version: 3.2.1
Latest release: over 1 year ago - 10 downloads - 928 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 3.6.0
Latest release: over 1 year ago - 25 downloads - 1,319 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 3.6.2
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
weishwu/diffbind 3.6.5

  • version: 3.4.4
Latest release: over 1 year ago - 10 downloads - 1,507 dependencies
wlc27/dcanr v1

  • version: 3.6.2
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
tamaraperteghella/r4_gencode latest

  • version: 3.2.1
Latest release: over 1 year ago - 8 downloads - 1,460 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 3.2.0
Latest release: over 1 year ago - 9 downloads - 2,274 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 3.9.0
Latest release: over 1 year ago - 9 downloads - 1,604 dependencies
cjchen/gxuclass 1.0

  • version: 3.8.0
Latest release: over 1 year ago - 12 downloads - 657 dependencies
tjhackmann/fermentationexplorer latest

  • version: 3.9.0
Latest release: almost 2 years ago - 9 downloads - 827 dependencies
preethiilumina/diffbind 1.5

fixed genome name

  • version: 3.6.2
Latest release: 9 months ago - 155 downloads - 626 dependencies
louisk92/spapros_scpnmf v1.0

  • version: 3.8.0
Latest release: over 1 year ago - 10 downloads - 1,422 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 3.8.0
Latest release: 9 months ago - 22 downloads - 1,356 dependencies
bianca7/clusterprofiler latest

  • version: 3.9.1
Latest release: over 1 year ago - 11 downloads - 1,315 dependencies
omicsclass/genome-comparison v1.0

比较基因组分析镜像

  • version: 3.6.2
Latest release: almost 2 years ago - 371 downloads - 1,302 dependencies
cmccornack/crmsc latest

  • version: 3.2.1
Latest release: over 1 year ago - 289 downloads - 1,476 dependencies
btrspg/genekitr latest

  • version: 3.9.0.001
Latest release: over 1 year ago - 162 downloads - 1,987 dependencies
omicschef/rnaseqchef v1.0.9

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 3.8.2
Latest release: about 1 year ago - 287 downloads - 1,420 dependencies
sornnujah/sk-bactopia-nullarbor-report alpha1

  • version: 3.2.1
Latest release: over 1 year ago - 122 downloads - 684 dependencies
mesti90/ecoli_hgt_all_in 1.1

  • version: 3.6.2
Latest release: about 1 year ago - 88 downloads - 1,148 dependencies
sridnona/r4.2.0 v1

  • version: 3.6.2
Latest release: over 1 year ago - 84 downloads - 832 dependencies
lroser/databricksbio latest

  • version: 3.8.2
Latest release: over 1 year ago - 79 downloads - 975 dependencies
tariship/dev_sync_directories latest

  • version: 3.6.2
Latest release: about 1 year ago - 112 downloads - 421 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 3.8.0
Latest release: over 1 year ago - 83 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 3.6.2
Latest release: over 1 year ago - 70 downloads - 290 dependencies
biocorecrg/microbiomeprofile 0.4

  • version: 3.7.1.002
Latest release: about 1 year ago - 71 downloads - 267 dependencies
etycksen/sc_deluxe 0.2

  • version: 3.6.2
Latest release: about 1 year ago - 249 downloads - 757 dependencies
gyusikhwang/tgs v1

  • version: 3.2.1
Latest release: over 1 year ago - 50 downloads - 1,095 dependencies
omicschef/epigenomechef v1.1.3

  • version: 3.8.2
Latest release: 11 months ago - 113 downloads - 1,066 dependencies
nfancy/scflow dev

  • version: 3.6.2
Latest release: over 1 year ago - 44 downloads - 778 dependencies
wyangwu/r4.1.2 latest

  • version: 3.11.0
Latest release: over 1 year ago - 67 downloads - 827 dependencies
bioxfu/xseurat2 latest

  • version: 3.6.2
Latest release: almost 2 years ago - 36 downloads - 982 dependencies
chunjiesamliu/scmocha latest

  • version: 3.8.2
Latest release: over 1 year ago - 43 downloads - 1,258 dependencies
denglab/vpfkit latest

  • version: 3.6.2
Latest release: almost 2 years ago - 36 downloads - 632 dependencies
jingxin/terrascpipe v0

  • version: 3.7.1.003
Latest release: almost 2 years ago - 25 downloads - 2,467 dependencies
qdidiscoveryservices/diffbind latest

  • version: 3.8.0
Latest release: over 1 year ago - 26 downloads - 526 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 3.6.2
Latest release: over 1 year ago - 25 downloads - 1,158 dependencies
dcarrillouu/plot_genomes 0.2

  • version: 3.6.2
Latest release: over 1 year ago - 25 downloads - 758 dependencies
btrspg/vscode-dkd-env latest

  • version: 3.9.0
Latest release: over 1 year ago - 24 downloads - 1,182 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 3.6.2
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
ycli1995/bioinfo_dev 1.0.1

  • version: 3.8.2
Latest release: 11 months ago - 48 downloads - 4,337 dependencies
omicsclass/pan-genome v1.0

  • version: 3.6.2
Latest release: over 1 year ago - 168 downloads - 3,108 dependencies
etretiakov/rocker-session latest

  • version: 3.9.0
Latest release: over 1 year ago - 22 downloads - 2,565 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 3.6.2
Latest release: over 1 year ago - 25 downloads - 1,332 dependencies
bianca7/mompreprocess latest

  • version: 3.9.0
Latest release: over 1 year ago - 53 downloads - 1,340 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 3.6.2
Latest release: almost 2 years ago - 14 downloads - 2,271 dependencies
fgualdr/env_gsea latest

  • version: 3.6.0
Latest release: over 1 year ago - 14 downloads - 566 dependencies
ericsalomaki/rnaseq_r4_2 latest

  • version: 3.6.2
Latest release: almost 2 years ago - 13 downloads - 989 dependencies
omicsclass/metagenomics latest

  • version: 3.6.2
Latest release: about 1 year ago - 13 downloads - 1,493 dependencies
btrspg/r-env latest

  • version: 3.10.0
Latest release: over 1 year ago - 12 downloads - 2,231 dependencies