robertplayer/scidap-qiime2 stable

btrspg/r-env cache

ijapesigan/r2u 2025-10-31-01182782

koki/urchin_workflow_seurat 20251014

mlepetit/ranalysis 3.3.4

prismcmap/biomarker 4602f53feb5a

prismcmap/sushi v0.0.2

weizhoujp/rchtc 4.3.0

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

paulinetrinh/docker_happi latest

prismcmap/base-clue-pseq v0.0.1

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

nciccbr/ccbr_r_4.3.0 v1

nathanprovin/cellcom 1.2.2

ijapesigan/rocker 2025-11-21-09230020

prismcmap/drc MTS028_PMTS079

matzieb/shiny-4.0.3-seurat4-spatial latest

afcai2c/r-studio-geo latest

gesiscss/binder-tlbbd-2dspring2018-2dlab-5f10-b89db5 85cb00a8af28ec9af53e79e947b0f4ff648544a6

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

prismcmap/normalization APS005_BIAS_CORRECTED

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mfsentma/atacseq latest

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

ijapesigan/rarch 2024-12-29-00501041

evolbioinfo/r-evol v4.2.2

r with ape and big.phylo packages

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

uvarc/rstudio tam5xe

andrewatmp/qiime_unzip latest

prismcmap/qc EPS005

mkvasnicka/acc-clusters latest

anlitiks/ra_takeda latest

stefanucciluca/tregopathies latest

prismcmap/lfc 0.0.1

kaizhang/scatac-bench 0.2.1

rayho123/hublti 20240523

用于Jupyterhub教学的环境

prismcmap/batch_correction APS005

gyusikhwang/tgs v1

emersonchao/dsc180b latest

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

prismcmap/compound_summary APS005

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

estat/batchchange 13-01-2023-182746

mpaltsai/biotextquest_top2vec 27122022

dragonflyscience/vtnz 2023-09-05

brusconi/seurat new

stormgod/deepmaps-cpu latest

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

qdidiscoveryservices/pseudobulk 2.0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

cliu97/r4.3_seurat latest

pecan/depends 4.0.2

Image that contains all the required external packages needed for PEcAn.

bixbeta/pavian v1

yosuketanigawa/rstudio_yt latest

dhspence/docker-hiccompare latest

alicesoto/illicitai latest

cheungweilim/pit-apps latest

Build with R package for PIT applications

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

daltoncp/rstudio_celegansbulksequencing 4.2_3

bioedge/edge_24_1_ubuntu18 20231115

bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

dsouzd04/himc_zellkonverter 1.6.5

danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

dantingz/seurat 1.0.2

winuthayanon/rstudio 4.3.0

abelhj/rstudio 4.2.3

nbarrowman/cru-rocker v25

lglforfun/rstudio_dev 4.3.2

cgrlab/qiime2 2023.5

btrspg/vscode-dkd-env latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

dataquality/dataquier 2.5.1

Data quality assessments guided by a data quality framework introduced by Schmidt et al 2021

mfsentma/rna latest

ycli1995/bioinfo_dev 1.1.0

daltoncp/rstudio_celeganssinglecell 4.2_12

arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

madhavsub/rstudio latestseurat

vasilkor/shiny-verse 1.0.19

viascientific/deseq2-docker 2.0

compbiocore/jupyterhub-docker-images-jh_image 20230524

dongminshin/sc_ppl 1.71

wlc27/dcanr v1

chiajungl/seurat 4.4.0-4.4

apollodorus/genentech-jp v1

koji11235/rnaseq_env latest

movano/python9with_r v2

robertplayer/scidap-genelists v5.0.0

vidhyagnanasekaran/rocker-single-cell v1