Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : @PKGNAME@

Explore the latest package usage data for @PKGNAME@ in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 701
Total downloads: 3,064,314

More details on packages.ecosyste.ms - JSON

veupathdb/rserve 8.1.4

  • version: @VERSION@
Latest release: 4 months ago - 626,889 downloads - 550 dependencies
ccdlstaging/dr_downloaders 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 127,834 downloads - 1,028 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: @VERSION@
Latest release: almost 3 years ago - 103,038 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: @PKGVERSION@, @VERSION@
Latest release: about 2 years ago - 95,633 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 94,460 downloads - 1,220 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: @VERSION@
Latest release: over 3 years ago - 95,030 downloads - 297 dependencies
ccdlstaging/dr_salmon 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 61,084 downloads - 916 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: @VERSION@
Latest release: over 2 years ago - 54,822 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: @VERSION@
Latest release: about 5 years ago - 52,152 downloads - 432 dependencies
nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

  • version: @VERSION@
Latest release: almost 4 years ago - 52,400 downloads - 309 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: @VERSION@
Latest release: over 5 years ago - 38,683 downloads - 559 dependencies
nfcore/eager 2.5.2

A Docker image for the nf-core/eager pipeline.

  • version: @VERSION@
Latest release: 7 months ago - 46,224 downloads - 738 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: @VERSION@
Latest release: over 1 year ago - 25,819 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: @PKGVERSION@, @VERSION@
Latest release: about 3 years ago - 19,985 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: @PKGVERSION@, @VERSION@
Latest release: over 2 years ago - 14,641 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 17,904 downloads - 894 dependencies
vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

  • version: @VERSION@
Latest release: 10 months ago - 26,275 downloads - 1,231 dependencies
nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

  • version: @VERSION@
Latest release: almost 4 years ago - 10,515 downloads - 331 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: @VERSION@, @PKGVERSION@
Latest release: over 2 years ago - 6,916 downloads - 12,259 dependencies
kbase/kbase sdkbase.latest

  • version: @VERSION@
Latest release: almost 7 years ago - 4,291 downloads - 2,934 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: @PKGVERSION@, @VERSION@
Latest release: over 3 years ago - 3,671 downloads - 1,218 dependencies
ccdlstaging/dr_smasher 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 7,326 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: @VERSION@
Latest release: about 4 years ago - 3,042 downloads - 1,044 dependencies
ccdlstaging/dr_illumina 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 6,466 downloads - 893 dependencies
patroonorg/patroondeps latest

  • version: @VERSION@
Latest release: almost 2 years ago - 3,003 downloads - 1,677 dependencies
dhspence/docker-biscuit latest

  • version: @VERSION@
Latest release: about 6 years ago - 1,948 downloads - 807 dependencies
ccdlstaging/dr_compendia 1.45.8

  • version: @VERSION@
Latest release: over 1 year ago - 4,957 downloads - 877 dependencies
nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

  • version: @VERSION@
Latest release: almost 4 years ago - 1,753 downloads - 257 dependencies
nfcore/airrflowreport dev

  • version: @VERSION@
Latest release: almost 2 years ago - 1,010 downloads - 409 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: @VERSION@
Latest release: over 6 years ago - 1,002 downloads - 366 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: @VERSION@
Latest release: over 2 years ago - 1,210 downloads - 654 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: @VERSION@
Latest release: over 2 years ago - 1,069,006 downloads - 607 dependencies
nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

  • version: @VERSION@
Latest release: over 4 years ago - 34,728 downloads - 354 dependencies
nfcore/hic 1.3.0

A docker container for the nf-core/hic pipeline.

  • version: @VERSION@
Latest release: over 3 years ago - 15,362 downloads - 257 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: @VERSION@, @PKGVERSION@
Latest release: about 4 years ago - 9,714 downloads - 340 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: @VERSION@, @PKGVERSION@
Latest release: almost 4 years ago - 7,770 downloads - 423 dependencies
nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

  • version: @VERSION@
Latest release: almost 4 years ago - 7,092 downloads - 488 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: @PKGVERSION@, @VERSION@
Latest release: almost 6 years ago - 1,293 downloads - 9,716 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: @VERSION@
Latest release: over 6 years ago - 727 downloads - 2,000 dependencies
prismcmap/depmap_versions v0.1.0

  • version: @VERSION@
Latest release: about 3 years ago - 2,190 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: @VERSION@
Latest release: about 6 years ago - 709 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: @PKGVERSION@, @VERSION@
Latest release: about 6 years ago - 1,189 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: @VERSION@
Latest release: about 6 years ago - 1,196 downloads - 413 dependencies
seglh/exomedepth f4716ad

  • version: @VERSION@
Latest release: about 1 year ago - 1,391 downloads - 548 dependencies
gene110/nipt_report latest

  • version: @VERSION@
Latest release: over 3 years ago - 808 downloads - 676 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: @VERSION@
Latest release: about 8 years ago - 518 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: @VERSION@
Latest release: about 8 years ago - 492 downloads - 2,934 dependencies
prismcmap/drc-module v0.0.1

  • version: @VERSION@
Latest release: about 2 years ago - 588 downloads - 647 dependencies
veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: @PKGVERSION@, @VERSION@
Latest release: 8 months ago - 605 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: @PKGVERSION@, @VERSION@
Latest release: almost 6 years ago - 788 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: @VERSION@
Latest release: over 2 years ago - 1,565 downloads - 1,382 dependencies
recetox/aplcms latest

  • version: @VERSION@
Latest release: over 3 years ago - 450 downloads - 458 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: @VERSION@
Latest release: about 1 year ago - 3,452 downloads - 1,464 dependencies
prismcmap/norm-module v0.0.1

  • version: @VERSION@
Latest release: almost 3 years ago - 425 downloads - 633 dependencies
dhspence/docker-basestation latest

  • version: @VERSION@, @PKGVERSION@
Latest release: almost 6 years ago - 313 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: @VERSION@, @PKGVERSION@
Latest release: about 3 years ago - 307 downloads - 1,375 dependencies
veitveit/complexbrowser release-1.6

  • version: @VERSION@
Latest release: about 1 year ago - 318 downloads - 1,296 dependencies
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

  • version: @VERSION@
Latest release: about 2 years ago - 286 downloads - 381 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: @VERSION@
Latest release: over 6 years ago - 291 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: @PKGVERSION@, @VERSION@
Latest release: over 4 years ago - 389 downloads - 1,127 dependencies
tercen/flowsom 0.2.3

  • version: @VERSION@
Latest release: over 3 years ago - 302 downloads - 805 dependencies
koki/pagoda latest

  • version: @VERSION@
Latest release: over 7 years ago - 261 downloads - 390 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: @VERSION@, @PKGVERSION@
Latest release: over 6 years ago - 536 downloads - 576 dependencies
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

  • version: @PKGVERSION@, @VERSION@
Latest release: over 6 years ago - 540 downloads - 430 dependencies
biocontainers/bioconductor-affy v1.52.0-1-deb_cv1

  • version: @VERSION@
Latest release: over 6 years ago - 546 downloads - 399 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: @VERSION@, @PKGVERSION@
Latest release: over 6 years ago - 536 downloads - 457 dependencies
biocontainers/bioconductor-biobase v2.34.0-1-deb_cv1

  • version: @VERSION@
Latest release: over 6 years ago - 534 downloads - 391 dependencies
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

  • version: @VERSION@, @PKGVERSION@
Latest release: over 6 years ago - 528 downloads - 498 dependencies