jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

rocker/tidyverse 4.5.1

Version-stable build of R, rstudio, and R packages

apache/zeppelin 0.12.0

Apache Zeppelin

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

rocker/verse 4.5.1

Adds tex & related publishing packages to version-locked tidyverse image

rocker/geospatial 4.5.1

Docker-based Geospatial toolkit for R, built on versioned Rocker images

bioconductor/bioconductor_docker RELEASE_3_20

Bioconductor Docker Images

rocker/shiny-verse 4.5.0

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

veupathdb/rserve 8.2.5

ccdlstaging/dr_downloaders 1.45.8

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

ashish1981/shinyapp-sarb latest

broadinstitute/terra-jupyter-aou 2.1.13

ccdlstaging/dr_affymetrix 1.45.8

rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

rocker/ml 4.4.1

Docker images with R + GPU support for machine learning libraries

ccdlstaging/dr_salmon 1.45.8

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

ashish1981/s390x-r-appln-z 3.6.3

180a51c0/gh-action-buildapp latest

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

rocker/ml-verse 4.4.1

mirekphd/ml-cpu-r40-rs-cust 20230912

fazenda/rsmd 64c1b962-4-14

mirekphd/ml-cpu-r36-rs-cust latest

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

mirekphd/ml-cpu-r36-base latest

ashish1981/s390x-r-shiny latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 56

biocontainers/imputeme vv1.0.7_cv1

biocontainers/isee-galaxy v3.13_cv1.0.0

qdidiscoveryservices/ms_pipeline latest

ashish1981/s390x-clefos-shiny latest

patroonorg/patroondeps latest

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

alligatorcompany/acs-exasol 1.0.5

exasol docker image with additional checks

databrewllc/odk-form-extraction 6097023

araalinetworks/devproxy 0.9.91

rapporteket/dev 1.3.5

broadinstitute/fungal_gatk4 gatk4.5.0.0

tercen/dartrusttidy 1.0.10

gesiscss/binder-palmoreck-2ddockerfiles-2dfor-2dbinder-f98a72 e6751152f3669d7fa6b0892ed229918a75b153df

dceoy/r-tidyverse latest

R with tidyverse

dragonflyscience/dragonverse-18.04 latest

nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/airrflowreport dev

dragonflyscience/sharknado 2025-06-23

recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

biocontainers/phylotools v0.2.4_cv1

afcai2c/python-r-ai latest

Image with Python and R packages

tercen/runtime-r40 4.0.4-6

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.5.0

prismcmap/reports v0.3.0

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

databrewllc/anomaly-detection acf56fc

This repository is used for forms anomaly detection

nfcore/proteomicslfq 1.0.0

A Docker Container for label free quantification for proteomics data.

nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_vcf-uniq 1.0.0

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

prismcmap/landing v0.2.2

intelliseqngs/task_vcf-prepare 1.0.5

dg520/rsimple 1.1

ocdr/ds-apps 1.0.43