Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : BiocIO

Explore the latest package usage data for BiocIO in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 238
Total downloads: 246,132

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.8.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.2.0
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.10.0
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.3.0
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 1.2.0
Latest release: almost 2 years ago - 237 downloads - 227 dependencies
koki/sctensor-experiments 20220208

  • version: 1.4.0
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.2.0
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 1.11.0
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 1.8.0
Latest release: about 2 years ago - 262 downloads - 766 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.2.0
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
jafoltz/scclassify latest

  • version: 1.4.0
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
crukmi/mesa main

  • version: 1.7.1
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.4.0
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.2.0
Latest release: about 2 years ago - 79 downloads - 2,131 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.8.0
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
tipsarin/rstudio 4.1.3viraltrack

  • version: 1.4.0
Latest release: almost 2 years ago - 54 downloads - 981 dependencies
lorentzb/gene8940_r 1.0

  • version: 1.8.0
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 1.8.0
Latest release: over 1 year ago - 331 downloads - 980 dependencies
khoulaha/jabba v1.0.0

  • version: 1.8.0
Latest release: almost 2 years ago - 42 downloads - 2,527 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.6.0
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
hoonbiolab/pepatac v1.1

  • version: 1.2.0
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
crukmi/mesa_dependencies latest

  • version: 1.8.0
Latest release: over 1 year ago - 63 downloads - 1,393 dependencies
koki/urchin_workflow_seurat 20230616

  • version: 1.8.0
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
dmiller15/minfi 4.2.0

  • version: 1.6.0
Latest release: over 2 years ago - 35 downloads - 1,415 dependencies
bryanfisk/capybara latest

  • version: 1.4.0
Latest release: almost 2 years ago - 35 downloads - 1,067 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.8.0
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 1.6.0
Latest release: about 2 years ago - 39 downloads - 1,452 dependencies
jpsmith5/peppro latest

  • version: 1.8.0
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.9.1
Latest release: almost 2 years ago - 91 downloads - 1,601 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.5.0
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.8.0
Latest release: 12 months ago - 89 downloads - 1,496 dependencies
mlepetit/rnormalisation 1.0

  • version: 1.2.0
Latest release: almost 2 years ago - 33 downloads - 2,142 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.4.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
weishwu/systempiper 12022022

  • version: 1.6.0
Latest release: almost 2 years ago - 19 downloads - 1,383 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 1.10.0
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.4.0
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
fgualdr/envrperm latest

  • version: 1.8.0
Latest release: almost 2 years ago - 18 downloads - 480 dependencies
mbaardwijk/hmftools latest

  • version: 1.4.0
Latest release: over 1 year ago - 25 downloads - 405 dependencies
h836472/cs_mainimage test

  • version: 1.4.0
Latest release: almost 2 years ago - 14 downloads - 769 dependencies
haileyzhang/fragpipe-analyst v0.23

A Docker container of Fragpipe-Analyst

  • version: 1.8.0
Latest release: over 1 year ago - 34 downloads - 1,511 dependencies
yiluxiangbei/pumpkin-genomealign-notebook 1.0

  • version: 1.4.0
Latest release: almost 3 years ago - 13 downloads - 2,028 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 1.8.0
Latest release: almost 2 years ago - 18 downloads - 546 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: 1.4.0
Latest release: almost 3 years ago - 14 downloads - 2,116 dependencies
gnwanne/decontx latest

  • version: 1.8.0
Latest release: almost 2 years ago - 18 downloads - 938 dependencies
skoyamamd/scoreinvhap latest

  • version: 1.4.0
Latest release: over 2 years ago - 14 downloads - 662 dependencies
lemoniada/test pipeline

  • version: 1.8.0
Latest release: almost 2 years ago - 13 downloads - 1,181 dependencies
hoonbiolab/chromothripsis v1.0

  • version: 1.4.0
Latest release: almost 3 years ago - 14 downloads - 505 dependencies
kisudsoe/r-base latest

  • version: 1.8.0
Latest release: over 1 year ago - 83 downloads - 1,107 dependencies
haileyzhang/phospho-analyst v1.0.1

  • version: 1.8.0
Latest release: about 1 year ago - 50 downloads - 796 dependencies
mtorresm55/r_env_4_1_0 v1.0

  • version: 1.4.0
Latest release: almost 2 years ago - 14 downloads - 354 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.8.0
Latest release: almost 2 years ago - 13 downloads - 598 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.8.0
Latest release: almost 2 years ago - 12 downloads - 383 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.10.0
Latest release: over 1 year ago - 299 downloads - 1,422 dependencies
jpsmith5/rpipe 0.3.1

  • version: 1.8.0
Latest release: almost 2 years ago - 12 downloads - 262 dependencies
alexthiery/archr 3.1

  • version: 1.4.0
Latest release: over 1 year ago - 133 downloads - 819 dependencies
abelean/seurat_azimuth 5b

  • version: 1.4.0
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
markataylor/r_yufree v1.0.0

  • version: 1.8.0
Latest release: almost 2 years ago - 14 downloads - 1,514 dependencies
sparktx/gviz 1.40.1

  • version: 1.6.0
Latest release: almost 2 years ago - 11 downloads - 288 dependencies
chriswyatt/genespaces latest

  • version: 1.4.0
Latest release: about 2 years ago - 11 downloads - 221 dependencies
edkang0925/diffutr latest

  • version: 1.8.0
Latest release: over 1 year ago - 14 downloads - 532 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.8.0, 1.10.0
Latest release: about 1 year ago - 33 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.8.0
Latest release: almost 2 years ago - 10 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.9.0
Latest release: almost 2 years ago - 10 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.8.0
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.10.0
Latest release: over 1 year ago - 9 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.8.0
Latest release: almost 2 years ago - 10 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.6.0
Latest release: almost 2 years ago - 9 downloads - 341 dependencies
apollodorus/polyglot v1

  • version: 1.8.0
Latest release: almost 2 years ago - 10 downloads - 428 dependencies
gpato/lacen-app 2.4.0

  • version: 1.4.0
Latest release: 12 months ago - 58 downloads - 801 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.8.0
Latest release: almost 2 years ago - 12 downloads - 270 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.8.0
Latest release: almost 2 years ago - 11 downloads - 271 dependencies
elynrfw/gerald-test latest

  • version: 1.8.0
Latest release: almost 2 years ago - 10 downloads - 349 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.6.0
Latest release: almost 2 years ago - 9 downloads - 2,217 dependencies
kdgosik/main-gitpod latest

  • version: 1.8.0
Latest release: over 1 year ago - 49 downloads - 1,820 dependencies
jieliu4wustl/wustl v0.1_20230907

  • version: 1.8.0
Latest release: about 1 year ago - 4,483 downloads - 1,124 dependencies
aokad/recount3 1.8.0

  • version: 1.8.0
Latest release: almost 2 years ago - 9 downloads - 121 dependencies
weishwu/chipseeker 1.34.1

  • version: 1.8.0
Latest release: over 1 year ago - 34 downloads - 423 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 1.6.0
Latest release: almost 2 years ago - 25 downloads - 953 dependencies
duclare123/vizcnv_dev latest

Visualization tool for WGS analysis

  • version: 1.8.0
Latest release: over 1 year ago - 15 downloads - 920 dependencies
jwcarlson/genespace latest

  • version: 1.10.0
Latest release: over 1 year ago - 46 downloads - 212 dependencies
fauzul/fuseq_wes_hg19 1.0

  • version: 1.4.0
Latest release: over 1 year ago - 9 downloads - 126 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 1.8.0
Latest release: over 1 year ago - 15 downloads - 931 dependencies
neutronstar21/rocker_tidyverse_2023_05_05_v1 latest

  • version: 1.10.0
Latest release: over 1 year ago - 8 downloads - 266 dependencies
apollodorus/genentech-jp v1

  • version: 1.4.0
Latest release: almost 2 years ago - 22 downloads - 1,947 dependencies
mhettich0years/r-images v1.1.2

  • version: 1.8.0
Latest release: almost 2 years ago - 11 downloads - 334 dependencies
shashankti/bioc_docker v1

  • version: 1.9.2
Latest release: almost 2 years ago - 7 downloads - 1,350 dependencies
zwcdocker/seurat latest

  • version: 1.2.0
Latest release: almost 2 years ago - 7 downloads - 655 dependencies
compbiocore/dscov_sct 20221201

  • version: 1.8.0
Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies
kxk302/g4hunter 1.0.0

  • version: 1.8.0
Latest release: almost 2 years ago - 20 downloads - 505 dependencies
hoonbiolab/hmftools_linx v1.23.1

  • version: 1.8.0
Latest release: almost 2 years ago - 10 downloads - 988 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.6.0
Latest release: over 1 year ago - 75 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.8.0
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.8.0
Latest release: over 1 year ago - 8 downloads - 1,038 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 1.8.0, 1.10.0
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies