robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20251014

vnmd/afni_22.1.14 latest

eppicenter/mad4hatter sha-cb4911b

vnmd/afni_20.3.01 latest

weizhoujp/rchtc 4.3.0

crukcibioinformatics/sequencingbase 9.5.4

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

nciccbr/ccbr_r_4.3.0 v1

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

raghukirannavipoint/aldex2 mar23

matzieb/shiny-4.0.3-seurat4-spatial latest

qdidiscoveryservices/seurat_cell_annotation latest

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

koki/velocytor 20221015

haileyzhang/phospho-analyst v1.0.2

alanocallaghan/high-dimensional-stats-r latest

brianyee/cropseq-essentials 1.0.0

omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

koki/bindsc 20220609

haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mfsentma/atacseq latest

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

qdidiscoveryservices/vcfcompare 1.0

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

uvarc/rstudio tam5xe

markshill/clustering_tree_building-env latest

atttilacs/dsp_geomxtools latest

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

albertea/numbat_light 02

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

luisas/r_sc.simg latest

crpeters/r-methylkit 4.2.1

stefanucciluca/tregopathies latest

etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

nikhil166/cellxgene_vip_docker v2.4

gyusikhwang/tgs v1

emersonchao/dsc180b latest

tercen/normalise_cytof_operator 0.2.3

dzhakparov/geneselectr-image latest

evafastpf/commot 0.1

brusconi/seurat new

stormgod/deepmaps-cpu latest

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

omicschef/epigenomechef v1.1.5

jordantdocker/income_le_analysis latest

nfancy/scflow 0.7.4

brianyee/rnaseq snakemake_1.0.0

vnmd/afni_20.2.00 20200707

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

cliu97/r4.3_seurat latest

mengchen18/xcmsviewer_process latest

yosuketanigawa/rstudio_yt latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

etretiakov/rocker-session latest

evolbioinfo/treewas v1.0

A phylogenetic tree-based approach to genome-wide association studies in microbes

hoonbiolab/lohhla v1.1

daltoncp/rstudio_celegansbulksequencing 4.2_3

compbiocore/lee_isg_erv 20230306

bioedge/edge_24_1_ubuntu18 20231115

bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

vnmd/afni_20.3.02 latest

jingxin/terrascpipe v0

bjornson/st_viewer v1

fabianegli/scp-recommendations-2022 1.0

njjtemp/scrattch-mapping 4.2.0

vnmd/afni_20.2.04 latest

winuthayanon/rstudio 4.3.0

abelhj/rstudio 4.2.3

mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

crukmi/nas-app latest

nbarrowman/cru-rocker v25

crukmi/liana_tensor2 0.1.9

cgrlab/qiime2 2023.5

jonasmrr/scrnaseq-pipeline latest

btrspg/vscode-dkd-env latest

alleninst/arrow_scrattch_hmapping_on_hpc latest

vnmd/afni_21.1.02 latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest