Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : edgeR

Explore the latest package usage data for edgeR in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 268
Total downloads: 1,749,654
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 3.36.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 4.0.3
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 3.40.2
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
koki/tensor-projects-parasite 20220819

  • version: 3.38.4
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
mlepetit/ranalysis 3.3.4

  • version: 3.34.1
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 3.32.1
Latest release: 11 months ago - 10,896 downloads - 633 dependencies
tariship/dev_sync_directories latest

  • version: 3.40.2
Latest release: over 2 years ago - 396 downloads - 421 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 4.4.2
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 3.40.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 3.22.3
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
koki/tensor-project-parasite 20211013

  • version: 3.34.1
Latest release: over 4 years ago - 107 downloads - 206 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 3.42.4
Latest release: over 2 years ago - 155 downloads - 679 dependencies
jpdodson/dsrna_docker latest

  • version: 3.40.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726

  • version: 3.28.0
Latest release: about 6 years ago - 138 downloads - 1,498 dependencies
nathanprovin/cellcom 1.2.2

  • version: 3.42.4
Latest release: over 2 years ago - 189 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 3.38.4
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 3.32.1
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 3.40.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 3.32.1
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 3.38.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 3.30.3
Latest release: about 5 years ago - 90 downloads - 588 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 3.22.2
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 3.40.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 3.38.4
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 3.36.0
Latest release: about 3 years ago - 215 downloads - 962 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 3.42.4
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
chgyi/bio 3.5.1

  • version: 3.22.3
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
tercen/compare_means_operator 0.1.9

  • version: 3.38.0
Latest release: over 2 years ago - 196 downloads - 559 dependencies
biocontainers/bioconductor-edger v3.14.0dfsg-1-deb_cv1

  • version: 3.14.0
Latest release: over 7 years ago - 168 downloads - 390 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 3.32.1
Latest release: 2 months ago - 1,341 downloads - 627 dependencies
koki/bindsc 20220609

  • version: 3.38.1
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 3.32.1
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
tercen/diffcyt_operator 0.4.4

  • version: 3.38.0
Latest release: almost 2 years ago - 135 downloads - 1,563 dependencies
mfsentma/atacseq latest

  • version: 3.36.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 3.40.2
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
chgyi/metaware_rna_denovo latest

  • version: 3.24.3
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
cjchen/tbtoolszone 2.0

  • version: 3.36.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
fallingstar10/hbsigrocker latest

  • version: 3.42.4
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 3.40.1
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 3.22.3
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 3.34.1
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
qdidiscoveryservices/flowr 1.0

  • version: 3.38.1
Latest release: over 3 years ago - 173 downloads - 1,476 dependencies
luisas/rde latest

  • version: 3.28.1
Latest release: about 5 years ago - 66 downloads - 549 dependencies
atttilacs/dsp_geomxtools latest

  • version: 3.36.0
Latest release: about 3 years ago - 114 downloads - 871 dependencies
tercen/flowcut_operator 0.1.8

  • version: 3.38.0
Latest release: almost 2 years ago - 95 downloads - 578 dependencies
tercen/normalyzer_operator 0.1.4

  • version: 3.38.0
Latest release: almost 2 years ago - 101 downloads - 590 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 3.32.1
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 3.36.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 3.40.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
prismcmap/qc EPS005

  • version: 3.32.1
Latest release: 6 months ago - 739 downloads - 245 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 3.40.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 3.28.1
Latest release: about 5 years ago - 21 downloads - 260 dependencies
stefanucciluca/tregopathies latest

  • version: 3.40.2
Latest release: over 2 years ago - 91 downloads - 488 dependencies
prismcmap/lfc 0.0.1

  • version: 3.32.1
Latest release: over 2 years ago - 1,066 downloads - 245 dependencies
chriswyatt/trandecoder.nf firstrun

  • version: 3.28.0
Latest release: almost 6 years ago - 22 downloads - 69 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 3.42.4
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 3.40.2
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 3.32.1
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
prismcmap/batch_correction APS005

  • version: 3.32.1
Latest release: 4 months ago - 956 downloads - 245 dependencies
gyusikhwang/tgs v1

  • version: 3.36.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 3.28.1
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
sbastkowski/quatradis-base latest-arm64

  • version: 3.40.2
Latest release: 8 months ago - 206 downloads - 396 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 3.28.0
Latest release: over 5 years ago - 10 downloads - 431 dependencies
prismcmap/compound_summary APS005

  • version: 3.32.1
Latest release: 4 months ago - 675 downloads - 627 dependencies
tercen/normalise_cytof_operator 0.2.3

  • version: 3.38.4
Latest release: almost 2 years ago - 53 downloads - 655 dependencies
evafastpf/commot 0.1

  • version: 3.28.1
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 3.40.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 3.41.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 3.42.4
Latest release: over 1 year ago - 146 downloads - 536 dependencies
sheddn/csaw latest

  • version: 3.40.0
Latest release: about 3 years ago - 27 downloads - 93 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 3.42.4
Latest release: almost 2 years ago - 807 downloads - 853 dependencies
tercen/tercen_studio_flowsuite 0.0.1

  • version: 3.38.1
Latest release: almost 4 years ago - 142 downloads - 574 dependencies
nfancy/scflow 0.7.4

  • version: 3.40.2
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 3.36.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
fluentin55/singlecell_docker 1.2

  • version: 3.40.2
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
crukmi/liana 0.1.9

  • version: 3.40.1
Latest release: about 3 years ago - 34 downloads - 287 dependencies
zwcdocker/seurat latest

  • version: 3.34.0
Latest release: about 3 years ago - 23 downloads - 655 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 3.40.0
Latest release: over 2 years ago - 76 downloads - 506 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 3.38.4
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
sheddn/bioinformatics-tools latest

  • version: 3.36.0
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
dhspence/docker-hiccompare latest

  • version: 3.28.1
Latest release: over 4 years ago - 130 downloads - 1,271 dependencies
njjai/genebasis latest

  • version: 3.40.2
Latest release: over 2 years ago - 44 downloads - 789 dependencies
bianca7/deseq2 latest

  • version: 3.40.2
Latest release: over 2 years ago - 40 downloads - 1,263 dependencies
luisas/rdeanalysis latest

  • version: 3.28.1
Latest release: over 5 years ago - 72 downloads - 508 dependencies
almahmoud/terra-jupyter bioc

  • version: 3.38.4
Latest release: about 3 years ago - 74 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 3.40.2
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 3.40.2
Latest release: almost 3 years ago - 13 downloads - 1,038 dependencies
repbioinfo/transformgampoi latest

  • version: 3.36.0
Latest release: about 2 years ago - 42 downloads - 1,664 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 3.24.3
Latest release: about 2 years ago - 155 downloads - 2,569 dependencies
jenfisher7/rstudio_sbae latest

  • version: 3.40.1
Latest release: about 3 years ago - 40 downloads - 1,604 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 3.42.4
Latest release: about 2 years ago - 110 downloads - 1,150 dependencies
jingxin/terrascpipe v0

  • version: 3.36.0
Latest release: about 3 years ago - 141 downloads - 2,467 dependencies
tercen/t_test_operator 1.1.4

  • version: 3.38.0
Latest release: over 1 year ago - 126 downloads - 1,547 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 3.40.2
Latest release: over 1 year ago - 510 downloads - 1,367 dependencies
bjornson/st_viewer v1

  • version: 3.20.9
Latest release: almost 7 years ago - 47 downloads - 892 dependencies
digitalproteomes/mh_class 2023

  • version: 3.36.0
Latest release: almost 3 years ago - 82 downloads - 3,939 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 3.40.0
Latest release: over 2 years ago - 67 downloads - 1,319 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 3.40.2
Latest release: over 2 years ago - 86 downloads - 1,158 dependencies
phenomedb/phenomedb-airflow latest

  • version: 3.40.2
Latest release: almost 3 years ago - 65 downloads - 1,310 dependencies