Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : formatR

Total dependents: 747
Total downloads: 4,882,801

More details on packages.ecosyste.ms - JSON

coala/base pre

A simple docker image featuring coala and it's dependencies.

  • version: 1.5
Latest release: almost 7 years ago - 1,940,485 downloads - 1,827 dependencies
veupathdb/rserve 7

  • version: 1.14
Latest release: 6 months ago - 624,940 downloads - 550 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.11
Latest release: about 2 years ago - 102,887 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.12
Latest release: over 1 year ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.14
Latest release: 6 months ago - 92,270 downloads - 1,220 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.11
Latest release: almost 3 years ago - 92,677 downloads - 297 dependencies
rocker/ropensci latest

  • version: 1.5
Latest release: about 6 years ago - 88,618 downloads - 1,589 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.9
Latest release: about 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.9
Latest release: about 3 years ago - 50,176 downloads - 309 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 1.12
Latest release: 7 months ago - 40,624 downloads - 738 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.14
Latest release: 8 months ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.11
Latest release: over 2 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.12
Latest release: almost 2 years ago - 13,673 downloads - 11,684 dependencies
ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

  • version: 1.7
Latest release: about 1 year ago - 13,462 downloads - 747 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: 1.7
Latest release: over 3 years ago - 10,364 downloads - 331 dependencies
rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

  • version: 1.7
Latest release: over 4 years ago - 12,227 downloads - 534 dependencies
rocker/r-rmd latest

Rocker container for Rmarkdown packages

  • version: 1.7
Latest release: almost 4 years ago - 8,177 downloads - 584 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.12
Latest release: almost 2 years ago - 6,685 downloads - 12,259 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.11
Latest release: over 2 years ago - 3,660 downloads - 1,218 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 1.7
Latest release: over 4 years ago - 3,524 downloads - 843 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.7
Latest release: over 3 years ago - 3,040 downloads - 1,044 dependencies
ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

  • version: 1.7
Latest release: almost 2 years ago - 3,001 downloads - 722 dependencies
ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

  • version: 1.7
Latest release: about 1 year ago - 3,150 downloads - 747 dependencies
patroonorg/patroondeps latest

  • version: 1.14
Latest release: about 1 year ago - 2,754 downloads - 1,677 dependencies
ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

  • version: 1.7
Latest release: about 1 year ago - 2,777 downloads - 841 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 1.7
Latest release: over 4 years ago - 2,657 downloads - 591 dependencies
dhspence/docker-biscuit latest

  • version: 1.5
Latest release: over 5 years ago - 1,935 downloads - 807 dependencies
rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

  • version: 1.7
Latest release: over 4 years ago - 1,775 downloads - 581 dependencies
ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

  • version: 1.7
Latest release: almost 2 years ago - 1,025 downloads - 1,011 dependencies
nfcore/airrflowreport dev

  • version: 1.14
Latest release: about 1 year ago - 994 downloads - 409 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.9
Latest release: over 1 year ago - 1,202 downloads - 654 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.12
Latest release: almost 2 years ago - 1,052,189 downloads - 607 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: 1.7
Latest release: about 3 years ago - 25,614 downloads - 354 dependencies
nfcore/hic dev

A docker container for the nf-core/hic pipeline.

  • version: 1.11
Latest release: over 2 years ago - 15,244 downloads - 257 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.7
Latest release: over 3 years ago - 9,677 downloads - 340 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.9
Latest release: about 3 years ago - 7,707 downloads - 423 dependencies
nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

  • version: 1.11
Latest release: almost 3 years ago - 5,499 downloads - 488 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.5
Latest release: over 5 years ago - 762 downloads - 9,716 dependencies
lucifer001/custom-rs-tf-multiuser gpu

  • version: 1.7
Latest release: about 3 years ago - 949 downloads - 807 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 1.5
Latest release: over 5 years ago - 715 downloads - 2,000 dependencies
prismcmap/depmap_versions dd55695d58fb

  • version: 1.11
Latest release: 5 months ago - 1,452 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.5
Latest release: over 5 years ago - 702 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.5
Latest release: over 5 years ago - 1,158 downloads - 616 dependencies
tercen/runtime-r35 3.5.3-7

  • version: 1.6
Latest release: about 2 years ago - 700 downloads - 563 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.5
Latest release: over 5 years ago - 1,141 downloads - 413 dependencies
afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

  • version: 1.11
Latest release: almost 2 years ago - 635 downloads - 1,650 dependencies
seglh/exomedepth f4716ad

  • version: 1.14
Latest release: 5 months ago - 928 downloads - 548 dependencies
gene110/nipt_report latest

  • version: 1.7
Latest release: about 3 years ago - 785 downloads - 676 dependencies
gesiscss/binder-arnim-2dstmdemo-166b8a 3c29f7eaee928ba308137abb0effe5998f8ffa52

  • version: 1.5
Latest release: over 4 years ago - 470 downloads - 2,089 dependencies
rocker/gdal latest

Build gdal separately to avoid timeouts

  • version: 1.7
Latest release: over 4 years ago - 520 downloads - 748 dependencies
prismcmap/drc-module robust_DRC

  • version: 1.11
Latest release: 12 months ago - 539 downloads - 647 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 1.14
Latest release: about 1 year ago - 445 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 1.5
Latest release: over 5 years ago - 765 downloads - 1,147 dependencies
fazenda/r-testing latest

ESTATCAMP's R testing environment.

  • version: 1.5
Latest release: over 5 years ago - 416 downloads - 680 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.12
Latest release: about 2 years ago - 1,002 downloads - 1,382 dependencies
tercen/operator_base 1.0.5

  • version: 1.4
Latest release: over 5 years ago - 393 downloads - 699 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.14
Latest release: 6 months ago - 2,811 downloads - 1,464 dependencies
prismcmap/norm-module 26be7aa8ab48

  • version: 1.11
Latest release: over 1 year ago - 380 downloads - 633 dependencies
nuest/ten-simple-rules-dockerfiles latest

  • version: 1.7
Latest release: over 3 years ago - 361 downloads - 752 dependencies
dhspence/docker-basestation latest

  • version: 1.5
Latest release: about 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.7
Latest release: over 2 years ago - 302 downloads - 1,375 dependencies
ocdr/dkube-datascience-rs-sk-cpu test-py

  • version: 1.7
Latest release: over 3 years ago - 299 downloads - 714 dependencies
nuest/rockerverse-paper latest

  • version: 1.7
Latest release: over 3 years ago - 286 downloads - 1,133 dependencies
qdidiscoveryservices/handle_meta latest

  • version: 1.7
Latest release: over 3 years ago - 331 downloads - 795 dependencies
rapporteket/rap-dev-data nodata

Tailor-made

  • version: 1.7
Latest release: almost 3 years ago - 281 downloads - 1,372 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 1.5
Latest release: almost 6 years ago - 271 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 1.7
Latest release: almost 4 years ago - 367 downloads - 1,127 dependencies
rapporteket/rap-dev latest

  • version: 1.7
Latest release: over 2 years ago - 257 downloads - 1,362 dependencies
nuest/rocker-lightgbm latest

A rocker/verse images with Microsoft's LightGBM

  • version: 1.7
Latest release: almost 5 years ago - 252 downloads - 799 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 1.12
Latest release: over 1 year ago - 353 downloads - 1,641 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 1.13
Latest release: over 1 year ago - 237 downloads - 227 dependencies
nuest/tidyverse-versioned 3.4.1

...

  • version: 1.5
Latest release: over 4 years ago - 227 downloads - 488 dependencies
koki/sctensor-experiments 20220208

  • version: 1.11
Latest release: over 2 years ago - 206 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 1.7
Latest release: over 3 years ago - 206 downloads - 452 dependencies
gesiscss/binder-benmarwick-2drrtools-9a1629 3f830bce55e733f17e599a632a4e930ee82b8edb

  • version: 1.7
Latest release: almost 3 years ago - 200 downloads - 1,122 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.11
Latest release: over 2 years ago - 354 downloads - 1,716 dependencies
nuest/verse-versioned latest

...

  • version: 1.5
Latest release: almost 7 years ago - 191 downloads - 740 dependencies
recetox/ramclustr 1.1.0-recetox0

  • version: 1.7
Latest release: over 3 years ago - 191 downloads - 593 dependencies
koki/biocdev 20230818

  • version: 1.14
Latest release: 9 months ago - 201 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 1.12
Latest release: over 1 year ago - 262 downloads - 766 dependencies
prismcmap/sushi develop

  • version: 1.14
Latest release: 4 months ago - 221 downloads - 723 dependencies
gesiscss/binder-wlandau-2ddrake-2dexamples-d960ed 73134a125630b10d47c10b5c038ba7d3af6fec16

  • version: 1.7
Latest release: about 3 years ago - 180 downloads - 1,264 dependencies
ctomlins/minion_qc latest

  • version: 1.5
Latest release: almost 6 years ago - 175 downloads - 654 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.11
Latest release: over 2 years ago - 1,211 downloads - 693 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.12
Latest release: over 1 year ago - 172 downloads - 962 dependencies
vanessa/prostate-raps latest

Dockerized prostate cancer re-ocurrence and survival prediction

  • version: 1.4
Latest release: almost 8 years ago - 165 downloads - 601 dependencies
tercen/atsne 1.1.11

  • version: 1.6
Latest release: over 4 years ago - 168 downloads - 780 dependencies
chgyi/bio 3.5.1

  • version: 1.5
Latest release: over 5 years ago - 158 downloads - 1,077 dependencies
evolbioinfo/minionqc v1.4.1

Quality control for MinION sequencing data

  • version: 1.6
Latest release: almost 5 years ago - 155 downloads - 500 dependencies
ctomlins/testuniv_update latest

  • version: 1.7
Latest release: over 3 years ago - 153 downloads - 758 dependencies
nuest/reproducible-research-at-giscience latest

  • version: 1.7
Latest release: almost 3 years ago - 139 downloads - 1,132 dependencies
ojbc/analytics-opencpu-demo latest

  • version: 1.4
Latest release: over 7 years ago - 137 downloads - 623 dependencies