Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : RCurl

Explore the latest package usage data for RCurl in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 1,093
Total downloads: 110,712,072

More details on packages.ecosyste.ms - JSON

jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 1.98-1.12
Latest release: about 1 year ago - 74,157,453 downloads - 2,095 dependencies
jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

  • version: 1.98-1.12
Latest release: about 1 year ago - 31,656,816 downloads - 2,728 dependencies
jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 1.98-1.12
Latest release: about 1 year ago - 1,757,302 downloads - 1,718 dependencies
veupathdb/rserve 7

  • version: 1.98-1.10
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.98-1.10
Latest release: 12 months ago - 124,831 downloads - 1,028 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 1.95-4.8
Latest release: almost 8 years ago - 115,438 downloads - 884 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.98-1.6
Latest release: over 2 years ago - 102,887 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.98-1.8, 1.98-1.9
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.95-4.10
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.98-1.3
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
rocker/ropensci latest

  • version: 1.95-4.10
Latest release: over 6 years ago - 88,618 downloads - 1,589 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.98-1.10
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.98-1.3
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 1.95-4.7
Latest release: almost 5 years ago - 52,130 downloads - 432 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.98-1.3
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
dit4c/dit4c-container-jupyterlab latest

DIT4C container for Jupyter Lab

  • version: 1.95-4.8
Latest release: over 7 years ago - 41,682 downloads - 585 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.95-4.12
Latest release: over 5 years ago - 38,314 downloads - 559 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 1.98-1.8
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
dit4c/dit4c-container-jupyter latest

  • version: 1.95-4.8
Latest release: over 7 years ago - 25,919 downloads - 585 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.98-1.12
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.98-1.5
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.98-1.7
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.98-1.10
Latest release: 12 months ago - 14,674 downloads - 894 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: 1.95-4.12
Latest release: almost 4 years ago - 10,364 downloads - 331 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.98-1.7
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

  • version: 1.98-1.3
Latest release: over 3 years ago - 5,337 downloads - 2,109 dependencies
hylleraas/singleuser 27

  • version: 1.98-1.5
Latest release: almost 2 years ago - 11,511 downloads - 2,614 dependencies
kbase/kbase sdkbase.latest

  • version: 1.95-4.7
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.98-1.3
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 1.95-4.12
Latest release: almost 5 years ago - 3,524 downloads - 843 dependencies
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.98-1.10
Latest release: 12 months ago - 4,929 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.98-1.2
Latest release: almost 4 years ago - 3,040 downloads - 1,044 dependencies
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.98-1.10
Latest release: 12 months ago - 3,448 downloads - 893 dependencies
patroonorg/patroondeps latest

  • version: 1.98-1.10
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 1.95-4.12
Latest release: almost 5 years ago - 2,657 downloads - 591 dependencies
bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

  • version: 1.98-1.2
Latest release: over 3 years ago - 2,533 downloads - 1,920 dependencies
snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

  • version: 1.98-1.2
Latest release: over 3 years ago - 2,250 downloads - 2,866 dependencies
alligatorcompany/acs-exasol 8.23.0.1

exasol docker image with additional checks

  • version: 1.98-1.5
Latest release: about 1 year ago - 2,029 downloads - 2,085 dependencies
dhspence/docker-biscuit latest

  • version: 1.95-4.11
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
araalinetworks/devproxy master--jenkins--2023-08-11-07-57-01

  • version: 1.98-1.12
Latest release: over 1 year ago - 1,850 downloads - 2,686 dependencies
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.98-1.10
Latest release: 12 months ago - 2,332 downloads - 877 dependencies
gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

  • version: 1.98-1.1
Latest release: over 3 years ago - 1,335 downloads - 1,885 dependencies
afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

  • version: 1.98-1.7
Latest release: almost 2 years ago - 1,131 downloads - 702 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 1.95-4.10
Latest release: almost 7 years ago - 1,055 downloads - 1,383 dependencies
kbase/metrics latest

  • version: 1.95-4.12
Latest release: over 3 years ago - 1,027 downloads - 973 dependencies
nfcore/airrflowreport dev

  • version: 1.98-1.10
Latest release: over 1 year ago - 994 downloads - 409 dependencies
kbase/errorlogging develop

  • version: 1.95-4.12
Latest release: almost 4 years ago - 948 downloads - 973 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.98-1.2
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
afcai2c/python-r-ai latest

Image with Python and R packages

  • version: 1.98-1.7
Latest release: over 2 years ago - 851 downloads - 851 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.98-1.3
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: 1.98-1.2
Latest release: over 3 years ago - 25,614 downloads - 354 dependencies
nfcore/hic dev

A docker container for the nf-core/hic pipeline.

  • version: 1.98-1.3
Latest release: about 3 years ago - 15,244 downloads - 257 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.98-1.2
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.98-1.3
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
hoonbiolab/cellranger v1.0

  • version: 1.98-1.4
Latest release: almost 3 years ago - 919 downloads - 682 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.95-4.11
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
gesiscss/binder-mkozturk-2dcmpe140-fa0cda f6261af265af3e5c388be9ba9969a5e640fe2e16

  • version: 1.95-4.12
Latest release: over 3 years ago - 759 downloads - 1,922 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 1.95-4.11
Latest release: about 6 years ago - 715 downloads - 2,000 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.95-4.11
Latest release: almost 6 years ago - 702 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.95-4.11
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
tercen/runtime-r35 3.5.3-7

  • version: 1.95-4.12
Latest release: over 2 years ago - 700 downloads - 563 dependencies
davidspek/kubeflow-datascience-notebook kale-dev-0.0.1

This image contains the regular jupyter/datascience-notebook edited for it to work in kubeflow.

  • version: 1.98-1.2
Latest release: about 4 years ago - 680 downloads - 2,114 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.95-4.11
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
gesiscss/singleuser-orc r2d-49e91d9

  • version: 1.98-1.1
Latest release: almost 5 years ago - 660 downloads - 1,900 dependencies
afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

  • version: 1.98-1.5
Latest release: over 2 years ago - 635 downloads - 1,650 dependencies
gesiscss/binder-matjesg-2dais-5f2019-df9f9f c588d97bc20b1345ea549a5260d2ec36137e911b

  • version: 1.95-4.12
Latest release: almost 5 years ago - 630 downloads - 2,075 dependencies
seglh/exomedepth f4716ad

  • version: 1.98-1.12, 1.98-1.13
Latest release: 12 months ago - 928 downloads - 548 dependencies
beakernotebook/beaker-base latest

Base image for building beaker docker image

  • version: 1.95-4.8
Latest release: about 8 years ago - 593 downloads - 1,825 dependencies
gene110/nipt_report latest

  • version: 1.98-1.2
Latest release: over 3 years ago - 785 downloads - 676 dependencies
gesiscss/binder-numeconcopenhagen-2dlectures-2d2020-a504cd 3037261943dce17c68a5d932223d3724580e1671

  • version: 1.95-4.12
Latest release: over 3 years ago - 555 downloads - 3,922 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 1.95-4.7
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
afcai2c/r-shiny pc22

R Shiniy - Build interactive web applications that can execute R code

  • version: 1.98-1.7
Latest release: about 2 years ago - 492 downloads - 1,748 dependencies
kbase/sdkbase latest

  • version: 1.95-4.7
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
rapporteket/base-r 4.2.2

  • version: 1.98-1.9
Latest release: almost 2 years ago - 1,666 downloads - 509 dependencies
gesiscss/binder-pablobernabeu-2dmodality-2dswitch-2deffects-2demerge-2dearly-2dand-2dincrease-2dthroughout-2dconceptual-2dprocessing-e2667d 3173ddce2b5cc44e37c810c654f4cc84c147c45b

  • version: 1.98-1.2
Latest release: over 3 years ago - 452 downloads - 2,029 dependencies
ferlabcrsj/all-spark-notebook 3.2.0

Spark notebook images

  • version: 1.98-1.5
Latest release: over 2 years ago - 444 downloads - 2,752 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 1.98-1.10
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 1.95-4.11
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
fazenda/r-testing latest

ESTATCAMP's R testing environment.

  • version: 1.95-4.11
Latest release: almost 6 years ago - 416 downloads - 680 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.98-1.6
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
phidata/jupyterlab 3.5.2

  • version: 1.98-1.9
Latest release: almost 2 years ago - 431 downloads - 2,228 dependencies
openmicroscopy/training-notebooks 0.7

A set of Notebooks to demonstrate how to access the images and metadata from OMERO

  • version: 1.98-1.1
Latest release: almost 5 years ago - 409 downloads - 2,707 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.98-1.10, 1.98-1.13
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
kraigerl95/jupyternotebook-r stable

Jupyter Notebook wiht personal changes

  • version: 1.98-1.12
Latest release: almost 2 years ago - 703 downloads - 1,903 dependencies
rprotobuf/ci latest

Continued Integration of RProtoBuf

  • version: 1.98-1.10
Latest release: almost 2 years ago - 349 downloads - 463 dependencies
dhspence/docker-basestation latest

  • version: 1.95-4.11
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies