broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

rocker/geospatial 4.4.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

veupathdb/rserve 8.2.2

broadinstitute/viral-core 2.0.21

ccdlstaging/dr_downloaders 1.45.8

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

broadinstitute/terra-jupyter-aou 2.1.13

ccdlstaging/dr_affymetrix 1.45.8

rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

rocker/ropensci 3.4.1

ccdlstaging/dr_salmon 1.45.8

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

180a51c0/gh-action-buildapp latest

dhspence/docker-basespace_chromoseq latest

nfcore/mag 1.2.0

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

rocker/ml-verse 4.4.1

broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 1.45.8

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

biocontainers/assemblytics v1.0ds-1-deb_cv1

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

hzibraunschweig/sormas-rscript 3.5-5.2022.5

biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

biocontainers/nanook v1.33dfsg-1-deb_cv1

biocontainers/paleomix v1.2.13.3-1-deb_cv1

biocontainers/roary v3.12.0dfsg-2-deb_cv1

artemklevtsov/r-alpine 3.3.1

R docker images based on the alpine:latest

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 56

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

mesosphere/mesosphere-data-toolkit latest

biocontainers/imputeme vv1.0.7_cv1

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ccdlstaging/dr_smasher 1.45.8

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v0.23.2

ocdr/dkube-datascience-rs-tf-cpu v2.0.0

ccdlstaging/dr_illumina 1.45.8

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

broadinstitute/terra-jupyter-gatk 0.0.13

mesosphere/mesosphere-jupyter-service latest

nfcore/bcellmagic 1.2.0

A preliminary container for the bcellmagic pipeline

alligatorcompany/acs-exasol 1.0.5

exasol docker image with additional checks

araalinetworks/devproxy 0.9.91

dragonflyscience/niwaverse 2020-08-11

ccdlstaging/dr_compendia 1.45.8

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

broadinstitute/fungal_gatk4 gatk4.5.0.0

alexwaldrop/prepare_metaxcan_input 39673a1fde1b6485392202b243b66ecb1a0e9828

Utility for converting gene-by-gene GWAS output to dbSNP ids for MetaXcan

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dceoy/r-tidyverse latest

R with tidyverse

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/neutronstar 1.0.0

A Docker Container for nf-core/neutronstar

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0

nfcore/airrflowreport dev

tercen/pamsoft_grid_operator 1.2.1

tercen/pamsoft_grid_qt_operator 1.2.0

dragonflyscience/sharknado 2024-06-10