Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : plyr

Explore the latest package usage data for plyr in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 1,565
Total downloads: 79,552,719

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 1.8.4
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

  • version: 1.8.9
Latest release: about 1 year ago - 31,656,816 downloads - 2,728 dependencies
jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 1.8.9, 1.8.8
Latest release: about 1 year ago - 1,757,302 downloads - 1,718 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 1.8.4
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

  • version: 1.8.8, 1.8.9
Latest release: about 1 year ago - 744,200 downloads - 1,336 dependencies
veupathdb/rserve 7

  • version: 1.8.8
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
broadinstitute/viral-core latest

  • version: 1.8.6
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.8.8
Latest release: 12 months ago - 124,831 downloads - 1,028 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 1.8.4
Latest release: almost 8 years ago - 115,438 downloads - 884 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.8.6
Latest release: over 2 years ago - 102,887 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.8.8, 1.8.7
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.8.8
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 1.8.8, 1.8.9
Latest release: about 1 year ago - 95,871 downloads - 2,239 dependencies
rocker/ropensci latest

  • version: 1.8.4
Latest release: over 6 years ago - 88,618 downloads - 1,589 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.8.8
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.8.6
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.8.6
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
180a51c0/gh-action-buildapp latest

  • version: 1.8.6
Latest release: over 4 years ago - 48,804 downloads - 1,987 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.8.4
Latest release: over 5 years ago - 38,314 downloads - 559 dependencies
nfcore/mag dev

  • version: 1.8.6
Latest release: over 3 years ago - 38,524 downloads - 269 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 1.8.7
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

  • version: 1.8.6
Latest release: almost 3 years ago - 32,224 downloads - 664 dependencies
rocker/ml-verse 4.3.2

  • version: 1.8.9, 1.8.8
Latest release: 11 months ago - 34,310 downloads - 1,414 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 1.8.4
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.8.8
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.8.6
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.8.7
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.8.4
Latest release: 12 months ago - 14,674 downloads - 894 dependencies
ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

  • version: 1.8.6
Latest release: over 1 year ago - 13,462 downloads - 747 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 1.8.8
Latest release: over 1 year ago - 22,757 downloads - 1,231 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: 1.8.4
Latest release: almost 4 years ago - 10,364 downloads - 331 dependencies
biocontainers/assemblytics v1.0ds-1-deb_cv1

  • version: 1.8.4
Latest release: over 5 years ago - 9,370 downloads - 632 dependencies
rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

  • version: 1.8.4
Latest release: almost 5 years ago - 12,227 downloads - 534 dependencies
biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

  • version: 1.8.4
Latest release: over 5 years ago - 9,305 downloads - 689 dependencies
biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

  • version: 1.8.4
Latest release: about 5 years ago - 8,456 downloads - 644 dependencies
hzibraunschweig/sormas-rscript 3.5-5.2022.5

  • version: 1.8.9
Latest release: over 1 year ago - 7,784 downloads - 1,041 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 1.8.4
Latest release: about 5 years ago - 7,963 downloads - 831 dependencies
biocontainers/nanook v1.33dfsg-1-deb_cv1

  • version: 1.8.4
Latest release: about 5 years ago - 7,924 downloads - 733 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 1.8.4
Latest release: about 5 years ago - 7,507 downloads - 1,167 dependencies
biocontainers/roary v3.12.0dfsg-2-deb_cv1

  • version: 1.8.4
Latest release: about 5 years ago - 7,506 downloads - 1,110 dependencies
artemklevtsov/r-alpine pkgdev

R docker images based on the alpine:latest

  • version: 1.8.4
Latest release: over 6 years ago - 7,390 downloads - 124 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.8.7
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

  • version: 1.8.6
Latest release: about 3 years ago - 5,800 downloads - 2,008 dependencies
gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

  • version: 1.8.6
Latest release: over 3 years ago - 5,337 downloads - 2,109 dependencies
hylleraas/singleuser 27

  • version: 1.8.6
Latest release: almost 2 years ago - 11,511 downloads - 2,614 dependencies
broadinstitute/viral-assemble latest

  • version: 1.8.6
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 1.8.6
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
mesosphere/mesosphere-data-toolkit latest

  • version: 1.8.4
Latest release: almost 6 years ago - 4,263 downloads - 1,270 dependencies
biocontainers/imputeme vv1.0.7_cv1

  • version: 1.8.6
Latest release: about 3 years ago - 3,931 downloads - 1,734 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 1.8.4
Latest release: almost 5 years ago - 3,524 downloads - 843 dependencies
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.8.8
Latest release: 12 months ago - 4,929 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.8.6
Latest release: almost 4 years ago - 3,040 downloads - 1,044 dependencies
ocdr/dkube-datascience-rs-sk-cpu-multiuser v1.1.1-tiji-test

  • version: 1.8.6
Latest release: over 2 years ago - 3,480 downloads - 751 dependencies
ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

  • version: 1.8.6
Latest release: over 2 years ago - 3,001 downloads - 722 dependencies
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.8.8
Latest release: 12 months ago - 3,448 downloads - 893 dependencies
ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

  • version: 1.8.6
Latest release: over 1 year ago - 3,150 downloads - 747 dependencies
patroonorg/patroondeps latest

  • version: 1.8.8
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

  • version: 1.8.6
Latest release: over 1 year ago - 2,777 downloads - 841 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 1.8.4
Latest release: almost 5 years ago - 2,657 downloads - 591 dependencies
gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

  • version: 1.8.5
Latest release: about 4 years ago - 2,479 downloads - 2,536 dependencies
bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

  • version: 1.8.6
Latest release: over 3 years ago - 2,533 downloads - 1,920 dependencies
snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

  • version: 1.8.6
Latest release: over 3 years ago - 2,250 downloads - 2,866 dependencies
broadinstitute/terra-jupyter-gatk 8444561

  • version: 1.8.5
Latest release: over 4 years ago - 2,239 downloads - 3,913 dependencies
mesosphere/mesosphere-jupyter-service latest

  • version: 1.8.4
Latest release: almost 6 years ago - 2,176 downloads - 2,835 dependencies
nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

  • version: 1.8.6
Latest release: over 3 years ago - 2,594 downloads - 298 dependencies
alligatorcompany/acs-exasol 8.23.0.1

exasol docker image with additional checks

  • version: 1.8.8
Latest release: about 1 year ago - 2,029 downloads - 2,085 dependencies
araalinetworks/devproxy master--jenkins--2023-08-11-07-57-01

  • version: 1.8.8
Latest release: over 1 year ago - 1,850 downloads - 2,686 dependencies
dragonflyscience/niwaverse 2020-08-11

  • version: 1.8.6
Latest release: over 4 years ago - 1,787 downloads - 1,445 dependencies
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.8.8
Latest release: 12 months ago - 2,332 downloads - 877 dependencies
rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

  • version: 1.8.4
Latest release: almost 5 years ago - 1,775 downloads - 581 dependencies
broadinstitute/fungal_gatk4 latest

  • version: 1.8.6
Latest release: almost 3 years ago - 16,447 downloads - 942 dependencies
alexwaldrop/prepare_metaxcan_input 39673a1fde1b6485392202b243b66ecb1a0e9828

Utility for converting gene-by-gene GWAS output to dbSNP ids for MetaXcan

  • version: 1.8.4
Latest release: almost 6 years ago - 1,614 downloads - 460 dependencies
gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

  • version: 1.8.6
Latest release: over 3 years ago - 1,335 downloads - 1,885 dependencies
dceoy/r-tidyverse latest

R with tidyverse

  • version: 1.8.8
Latest release: almost 2 years ago - 1,242 downloads - 615 dependencies
dragonflyscience/dragonverse-18.04 latest

  • version: 1.8.6
Latest release: over 2 years ago - 1,227 downloads - 1,440 dependencies
afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

  • version: 1.8.7
Latest release: almost 2 years ago - 1,131 downloads - 702 dependencies
nfcore/neutronstar latest

A Docker Container for nf-core/neutronstar

  • version: 1.8.4
Latest release: about 4 years ago - 1,306 downloads - 253 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 1.8.4
Latest release: almost 7 years ago - 1,055 downloads - 1,383 dependencies
kbase/metrics latest

  • version: 1.8.5
Latest release: over 3 years ago - 1,027 downloads - 973 dependencies
ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

  • version: 1.8.6
Latest release: over 2 years ago - 1,025 downloads - 1,011 dependencies
nfcore/airrflowreport dev

  • version: 1.8.8
Latest release: over 1 year ago - 994 downloads - 409 dependencies
tercen/pamsoft_grid_operator 34f00419

  • version: 1.8.7
Latest release: over 1 year ago - 995 downloads - 1,018 dependencies
tercen/pamsoft_grid_qt_operator latest

  • version: 1.8.7
Latest release: over 2 years ago - 977 downloads - 1,012 dependencies
dragonflyscience/sharknado 2023-07-23

  • version: 1.8.7, 1.8.8
Latest release: over 1 year ago - 1,298 downloads - 2,516 dependencies