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Package Usage : cran : scater

Explore the latest package usage data for scater in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 78
Total downloads: 22,695
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 1.26.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.22.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 1.30.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 1.26.1
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
weizhoujp/rchtc 4.3.0

  • version: 1.28.0
Latest release: over 2 years ago - 141 downloads - 738 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 1.34.1
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
nathanprovin/cellcom 1.2.2

  • version: 1.28.0
Latest release: over 2 years ago - 189 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 1.24.0
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 1.26.1
Latest release: about 3 years ago - 75 downloads - 699 dependencies
koki/velocytor 20221015

  • version: 1.24.0
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.27.2
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
koki/bindsc 20220609

  • version: 1.24.0
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.26.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.26.1
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
luisas/rde latest

  • version: 1.14.6
Latest release: about 5 years ago - 66 downloads - 549 dependencies
andrewatmp/qiime_unzip latest

  • version: 1.26.0
Latest release: over 2 years ago - 151 downloads - 598 dependencies
luisas/r_sc.simg latest

  • version: 1.14.6
Latest release: about 5 years ago - 21 downloads - 260 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 1.26.0
Latest release: about 3 years ago - 20 downloads - 1,935 dependencies
gyusikhwang/tgs v1

  • version: 1.22.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 1.28.0
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
emersonchao/dsc180b latest

  • version: 1.26.0
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
tercen/normalise_cytof_operator 0.2.3

  • version: 1.24.0
Latest release: almost 2 years ago - 53 downloads - 655 dependencies
brianyee/r-essentials 2.0.0

  • version: 1.22.0
Latest release: 6 months ago - 121 downloads - 1,682 dependencies
brusconi/seurat new

  • version: 1.28.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.26.1
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 1.28.0
Latest release: about 2 years ago - 807 downloads - 853 dependencies
nfancy/scflow 0.7.4

  • version: 1.26.1
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 1.26.0
Latest release: 4 months ago - 1,863 downloads - 3,823 dependencies
fluentin55/singlecell_docker 1.2

  • version: 1.26.1
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
crukmi/liana 0.1.9

  • version: 1.26.1
Latest release: about 3 years ago - 34 downloads - 287 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.24.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
sebimer/samba-v4-qiime2 2024.2

  • version: 1.26.0
Latest release: almost 2 years ago - 284 downloads - 583 dependencies
etretiakov/rocker-session latest

  • version: 1.28.0
Latest release: over 2 years ago - 78 downloads - 2,565 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.26.0
Latest release: about 2 years ago - 155 downloads - 2,569 dependencies
jingxin/terrascpipe v0

  • version: 1.22.0
Latest release: about 3 years ago - 141 downloads - 2,467 dependencies
fabianegli/scp-recommendations-2022 1.0

  • version: 1.26.1
Latest release: almost 3 years ago - 42 downloads - 1,328 dependencies
winuthayanon/rstudio 4.3.0

  • version: 1.28.0
Latest release: over 2 years ago - 166 downloads - 2,687 dependencies
crukmi/nas-app latest

  • version: 1.18.6
Latest release: about 3 years ago - 40 downloads - 701 dependencies
crukmi/liana_tensor2 0.1.9

  • version: 1.26.1
Latest release: about 3 years ago - 21 downloads - 684 dependencies
cgrlab/qiime2 2023.5

  • version: 1.26.0
Latest release: over 2 years ago - 90 downloads - 526 dependencies
btrspg/vscode-dkd-env latest

  • version: 1.22.0
Latest release: almost 3 years ago - 67 downloads - 1,182 dependencies
jonasmrr/scrnaseq-pipeline latest

  • version: 1.26.0
Latest release: over 2 years ago - 55 downloads - 356 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.18.6
Latest release: about 3 years ago - 89 downloads - 406 dependencies
felixschlesinger/assign_types v0.2

  • version: 1.22.0
Latest release: almost 3 years ago - 360 downloads - 503 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.28.0
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
ucigenomics/spatiallibd latest

  • version: 1.26.1
Latest release: about 3 years ago - 27 downloads - 2,006 dependencies
tercen/compensate_cytof_operator 0.0.7

  • version: 1.24.0
Latest release: about 3 years ago - 76 downloads - 1,643 dependencies
wyangwu/r4.1.2 latest

  • version: 1.22.0
Latest release: over 2 years ago - 93 downloads - 827 dependencies
wlc27/dcanr v1

  • version: 1.26.1
Latest release: almost 3 years ago - 94 downloads - 1,681 dependencies
tercen/tercen-studio-flowsuite 3.15-6

  • version: 1.24.0
Latest release: over 2 years ago - 130 downloads - 1,885 dependencies
robertplayer/scidap-genelists v5.0.0

  • version: 1.22.0
Latest release: over 1 year ago - 444 downloads - 609 dependencies
vidhyagnanasekaran/rocker-single-cell v1

  • version: 1.26.1
Latest release: almost 3 years ago - 36 downloads - 886 dependencies
cwong23/stx_env latest

Environment for spatial pipeline

  • version: 1.26.1
Latest release: over 2 years ago - 66 downloads - 1,606 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 1.26.0
Latest release: about 3 years ago - 41 downloads - 546 dependencies
luisas/r_sc latest

  • version: 1.14.6
Latest release: about 5 years ago - 23 downloads - 536 dependencies
weizhoujp/r-chtc-v1 latest

  • version: 1.28.0
Latest release: over 2 years ago - 5 downloads - 724 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.28.0
Latest release: over 2 years ago - 18 downloads - 1,422 dependencies
bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

  • version: 1.22.0
Latest release: 9 months ago - 52,691 downloads - 1,551 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.21.2
Latest release: over 4 years ago - 3,692 downloads - 1,218 dependencies
denglab/vpfkit_base latest

  • version: 1.26.1
Latest release: almost 3 years ago - 26 downloads - 1,089 dependencies
cplaisier/ccafv2_extra latest

  • version: 1.26.1
Latest release: over 2 years ago - 33 downloads - 1,463 dependencies
porchard/decontx 20230104

  • version: 1.26.1
Latest release: about 3 years ago - 45 downloads - 830 dependencies
abelean/seurat_desctools 4.1.0

  • version: 1.22.0
Latest release: almost 3 years ago - 810 downloads - 1,090 dependencies
bigomics/omicsplayground-base ub2204_v4

  • version: 1.22.0
Latest release: over 1 year ago - 1,636 downloads - 1,536 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 1.20.1
Latest release: over 2 years ago - 547 downloads - 924 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.24.0
Latest release: over 3 years ago - 120 downloads - 1,441 dependencies
tercen/debarcoding_cytof_operator 0.3.2

  • version: 1.24.0
Latest release: almost 2 years ago - 210 downloads - 1,659 dependencies
mbwali/jupyterlab qiime2023

  • version: 1.26.0
Latest release: over 2 years ago - 176 downloads - 1,941 dependencies
cmccornack/crmsc latest

  • version: 1.22.0
Latest release: over 2 years ago - 407 downloads - 1,476 dependencies
chunjiesamliu/scmocha latest

  • version: 1.28.0
Latest release: over 2 years ago - 74 downloads - 1,258 dependencies
crukmi/liana_tensor 0.1.9

  • version: 1.26.1
Latest release: about 3 years ago - 27 downloads - 467 dependencies
denglab/vpfkit latest

  • version: 1.24.0
Latest release: almost 3 years ago - 73 downloads - 632 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.26.1
Latest release: over 2 years ago - 370 downloads - 2,660 dependencies
kuangda/pc12 latest

  • version: 1.24.0
Latest release: almost 3 years ago - 38 downloads - 1,326 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 1.24.0
Latest release: over 3 years ago - 555 downloads - 1,641 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.28.0
Latest release: over 2 years ago - 709 downloads - 1,422 dependencies
abelean/seurat_deg 4.1.0

  • version: 1.22.0
Latest release: almost 3 years ago - 42 downloads - 1,083 dependencies
abelean/seurat_azimuth 5.0.1

  • version: 1.22.0
Latest release: almost 2 years ago - 1,617 downloads - 1,141 dependencies
andrewatmp/testf latest

  • version: 1.26.0
Latest release: over 2 years ago - 468 downloads - 536 dependencies