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Package Usage : cran : annotate

Explore the latest package usage data for annotate in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 296
Total downloads: 1,290,623
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

btrspg/r-env cache

  • version: 1.78.0
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 1.76.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
biocorecrg/trax 0.2

  • version: 1.68.0
Latest release: over 2 years ago - 38 downloads - 296 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.74.0
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.70.0
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 1.68.0
Latest release: 11 months ago - 10,896 downloads - 633 dependencies
prismcmap/sushi v0.0.2

  • version: 1.68.0
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.74.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.64.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.56.2
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
tariship/dev_sync_directories latest

  • version: 1.76.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
andimajore/unpast_eval_container_asthma latest

  • version: 1.56.2
Latest release: over 2 years ago - 142 downloads - 486 dependencies
hdsu/etbii2023 latest

  • version: 1.72.0
Latest release: about 3 years ago - 138 downloads - 358 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 1.68.0
Latest release: about 4 years ago - 116 downloads - 318 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.58.0
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.78.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.76.0
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.72.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 1.68.0
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.76.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.68.0
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 1.74.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 1.72.0
Latest release: about 4 years ago - 61 downloads - 327 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 1.66.0
Latest release: about 5 years ago - 90 downloads - 588 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 1.58.0
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.76.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 1.76.0
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.77.0
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 1.76.0
Latest release: over 2 years ago - 86 downloads - 386 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.78.0
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.73.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.52.1
Latest release: over 7 years ago - 172 downloads - 523 dependencies
chgyi/bio 3.5.1

  • version: 1.58.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.56.1
Latest release: about 8 years ago - 166 downloads - 633 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 1.68.0
Latest release: 2 months ago - 1,341 downloads - 627 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.76.0
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.68.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
mfsentma/atacseq latest

  • version: 1.72.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
biocontainers/bioconductor-genefilter v1.56.0-1-deb_cv1

  • version: 1.52.1
Latest release: over 7 years ago - 153 downloads - 428 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.60.0
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
chlazaris/dge_env 0.1

  • version: 1.72.0
Latest release: over 2 years ago - 17 downloads - 320 dependencies
alexthiery/archr 3.1

  • version: 1.72.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
cjchen/tbtoolszone 2.0

  • version: 1.72.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.78.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.76.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.58.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.76.0
Latest release: almost 3 years ago - 62 downloads - 1,332 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 1.70.0
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
luisas/rde latest

  • version: 1.64.0
Latest release: about 5 years ago - 66 downloads - 549 dependencies
uvarc/rstudio tam5xe

  • version: 1.78.0
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
atttilacs/dsp_geomxtools latest

  • version: 1.72.0
Latest release: about 3 years ago - 114 downloads - 871 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 1.64.0
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.68.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 1.72.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.76.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
prismcmap/qc EPS005

  • version: 1.68.0
Latest release: 6 months ago - 739 downloads - 245 dependencies
luisas/r_sc.simg latest

  • version: 1.64.0
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.76.0
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
stefanucciluca/tregopathies latest

  • version: 1.76.0
Latest release: over 2 years ago - 91 downloads - 488 dependencies
prismcmap/lfc 0.0.1

  • version: 1.68.0
Latest release: over 2 years ago - 1,066 downloads - 245 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 1.76.0
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.68.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
prismcmap/batch_correction APS005

  • version: 1.68.0
Latest release: 4 months ago - 956 downloads - 245 dependencies
gyusikhwang/tgs v1

  • version: 1.72.0
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 1.64.0
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.64.0
Latest release: over 5 years ago - 10 downloads - 431 dependencies
prismcmap/compound_summary APS005

  • version: 1.68.0
Latest release: 4 months ago - 675 downloads - 627 dependencies
mshriver01/share_task_archr latest

  • version: 1.72.0
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
shawnchi/imputationserver v1.71

  • version: 1.56.2
Latest release: almost 3 years ago - 83 downloads - 885 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 1.68.0
Latest release: over 1 year ago - 68 downloads - 421 dependencies
evafastpf/commot 0.1

  • version: 1.64.0
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.76.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.77.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 1.78.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.76.0
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.78.0
Latest release: over 2 years ago - 26 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.76.0
Latest release: about 3 years ago - 32 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.74.0
Latest release: about 3 years ago - 33 downloads - 341 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.78.0
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.72.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 1.68.0
Latest release: over 1 year ago - 620 downloads - 1,112 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 1.72.0
Latest release: over 2 years ago - 142 downloads - 441 dependencies
msgao/deseq2 latest

  • version: 1.72.0
Latest release: about 3 years ago - 26 downloads - 384 dependencies
mfilipuz/r_v423 23.05.09

  • version: 1.76.0
Latest release: over 2 years ago - 46 downloads - 208 dependencies
mhettich0years/r-images v1.1.2

  • version: 1.76.0
Latest release: about 3 years ago - 143 downloads - 334 dependencies
bixbeta/pavian v1

  • version: 1.68.0
Latest release: about 3 years ago - 23 downloads - 388 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.76.0
Latest release: over 2 years ago - 76 downloads - 506 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.74.0
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
andrewsg/archr dev

  • version: 1.78.0
Latest release: almost 2 years ago - 173 downloads - 1,356 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.72.0
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
compbiocore/dscov_sct 20221201

  • version: 1.76.0
Latest release: about 3 years ago - 44 downloads - 1,031 dependencies
bianca7/deseq2 latest

  • version: 1.76.0
Latest release: over 2 years ago - 40 downloads - 1,263 dependencies
luisas/rdeanalysis latest

  • version: 1.64.0
Latest release: over 5 years ago - 72 downloads - 508 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.64.0
Latest release: about 6 years ago - 16 downloads - 2,128 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.74.0
Latest release: about 3 years ago - 74 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.76.0
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.76.0
Latest release: almost 3 years ago - 13 downloads - 1,038 dependencies
repbioinfo/transformgampoi latest

  • version: 1.72.0
Latest release: about 2 years ago - 42 downloads - 1,664 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.60.1
Latest release: about 2 years ago - 155 downloads - 2,569 dependencies