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Package Usage : cran : rtracklayer

Explore the latest package usage data for rtracklayer in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 295
Total downloads: 1,448,407
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

btrspg/r-env cache

  • version: 1.60.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 1.58.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.54.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.58.0
Latest release: about 3 years ago - 90 downloads - 494 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.60.0
Latest release: 4 months ago - 821 downloads - 739 dependencies
luisas/rannotation_forcats latest

  • version: 1.46.0
Latest release: over 5 years ago - 46 downloads - 89 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.52.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.56.1
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.46.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
tariship/dev_sync_directories latest

  • version: 1.58.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
kuglerf/tft_r v5

  • version: 1.58.0
Latest release: over 2 years ago - 26 downloads - 812 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.52.0
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.60.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.58.0
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
jpdodson/dsrna_docker latest

  • version: 1.58.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.58.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 1.54.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.46.0
Latest release: about 4 years ago - 110 downloads - 828 dependencies
js2264/fourdndata 1.1.0

  • version: 1.61.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.58.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 1.56.1
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 1.46.0
Latest release: over 2 years ago - 37 downloads - 725 dependencies
koki/workflow 20210327

  • version: 1.50.0
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 1.58.0
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 1.58.0
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.59.1
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.54.0
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 1.34.1
Latest release: over 7 years ago - 193 downloads - 427 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.60.1
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.55.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.34.1
Latest release: over 7 years ago - 165 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.40.6
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 1.60.1
Latest release: 11 months ago - 930 downloads - 1,625 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.58.0
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.34.1
Latest release: over 7 years ago - 147 downloads - 453 dependencies
mfsentma/atacseq latest

  • version: 1.54.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.58.0
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.58.0
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.60.0
Latest release: over 2 years ago - 1,044 downloads - 784 dependencies
chlazaris/dge_env 0.1

  • version: 1.54.0
Latest release: over 2 years ago - 17 downloads - 320 dependencies
alexthiery/archr 3.1

  • version: 1.54.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
cjchen/gxuclass 1.0

  • version: 1.60.0
Latest release: over 2 years ago - 19 downloads - 657 dependencies
cjchen/tbtoolszone 2.0

  • version: 1.54.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.60.0
Latest release: over 2 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.60.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.40.3
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 1.58.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 1.60.0
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
luisas/rde latest

  • version: 1.46.0
Latest release: about 5 years ago - 66 downloads - 549 dependencies
uvarc/rstudio tam5xe

  • version: 1.60.1
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.50.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
almurphy/mungesumstats latest

  • version: 1.61.0
Latest release: over 2 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.58.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
alexthiery/enhancer_annotation_and_motif_analysis latest

  • version: 1.50.0
Latest release: almost 3 years ago - 72 downloads - 210 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 1.46.0
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
luisas/r_sc.simg latest

  • version: 1.46.0
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.58.0
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
gru4/scan2workinghg38 latest

  • version: 1.54.0
Latest release: over 2 years ago - 71 downloads - 776 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.58.0
Latest release: about 3 years ago - 80 downloads - 383 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 1.58.0
Latest release: over 2 years ago - 291 downloads - 218 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.50.0
Latest release: almost 3 years ago - 28 downloads - 664 dependencies
jpsmith5/rpipe 0.3.1

  • version: 1.58.0
Latest release: about 3 years ago - 69 downloads - 262 dependencies
gru4/scan2fixedhg38 latest

  • version: 1.54.0
Latest release: over 2 years ago - 88 downloads - 777 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 1.58.0
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.50.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
alexsickler/open-pedcan latest

  • version: 1.46.0
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 1.60.1
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
gesiscss/binder-r2d-g5b5b759-fraunhofer-2ditmp-2dalister-26fdaf 11bce8bee1e1b0252d2ee5356a32b5b44c0dff4d

  • version: 1.46.0
Latest release: over 2 years ago - 67 downloads - 1,853 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 1.46.0
Latest release: over 2 years ago - 74 downloads - 383 dependencies
sparktx/gviz 1.40.1

  • version: 1.56.1
Latest release: about 3 years ago - 34 downloads - 288 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.46.0
Latest release: over 5 years ago - 10 downloads - 431 dependencies
pauffret/peak-calling-box 1.0

  • version: 1.46.0
Latest release: almost 3 years ago - 24 downloads - 212 dependencies
chriswyatt/genespaces latest

  • version: 1.54.0
Latest release: over 3 years ago - 54 downloads - 221 dependencies
mshriver01/share_task_archr latest

  • version: 1.54.0
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
gpato/lacen-app 3.1.0

  • version: 1.54.0
Latest release: 5 months ago - 1,022 downloads - 801 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 1.54.0
Latest release: over 2 years ago - 158 downloads - 316 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.58.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.59.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 1.60.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.58.0
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.60.0
Latest release: over 2 years ago - 26 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.58.0
Latest release: about 3 years ago - 32 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.56.1
Latest release: about 3 years ago - 33 downloads - 341 dependencies
apollodorus/polyglot v1

  • version: 1.58.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.60.1
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.54.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
gevrony/hidef-seq 3.0

  • version: 1.54.0
Latest release: 11 months ago - 430 downloads - 1,205 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.58.0
Latest release: about 3 years ago - 18 downloads - 270 dependencies
kdgosik/main-gitpod latest

  • version: 1.58.0
Latest release: almost 3 years ago - 232 downloads - 1,820 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 1.50.0
Latest release: over 1 year ago - 620 downloads - 1,112 dependencies
fluentin55/singlecell_docker 1.2

  • version: 1.58.0
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.58.0
Latest release: about 3 years ago - 25 downloads - 271 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 1.54.0
Latest release: over 2 years ago - 142 downloads - 441 dependencies
breezykermo/gvis latest

  • version: 1.46.0
Latest release: over 5 years ago - 23 downloads - 1,619 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 1.54.0
Latest release: over 2 years ago - 54 downloads - 337 dependencies
mfilipuz/r_v423 23.05.09

  • version: 1.58.0
Latest release: over 2 years ago - 46 downloads - 208 dependencies
zwcdocker/seurat latest

  • version: 1.52.1
Latest release: about 3 years ago - 23 downloads - 655 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.58.0
Latest release: over 2 years ago - 76 downloads - 506 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.46.0
Latest release: about 3 years ago - 25 downloads - 325 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.46.0
Latest release: almost 4 years ago - 24 downloads - 718 dependencies