jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

rocker/tidyverse 4.4.1

Version-stable build of R, rstudio, and R packages

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

rocker/verse 4.4.2

Adds tex & related publishing packages to version-locked tidyverse image

rocker/geospatial 4.4.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

bioconductor/bioconductor_docker RELEASE_3_20

Bioconductor Docker Images

rocker/shiny-verse 4.4.2

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

veupathdb/rserve 8.2.2

ccdlstaging/dr_downloaders 1.45.8

ashish1981/x86-r-z-appln latest

ashish1981/shinyapp-sarb latest

broadinstitute/terra-jupyter-aou 2.1.13

ccdlstaging/dr_affymetrix 1.45.8

rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

rocker/ropensci 3.4.1

rocker/ml 4.4.1

Docker images with R + GPU support for machine learning libraries

ccdlstaging/dr_salmon 1.45.8

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

ashish1981/s390x-r-appln-z 3.6.3

180a51c0/gh-action-buildapp latest

rocker/ml-verse 4.4.1

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

fazenda/rsmd 64c1b962-4-14

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 1.45.8

ashish1981/zreferenceimplementation d17052022

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

biocontainers/assemblytics v1.0ds-1-deb_cv1

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

hzibraunschweig/sormas-rscript 3.5-5.2022.5

biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

biocontainers/nanook v1.33dfsg-1-deb_cv1

biocontainers/paleomix v1.2.13.3-1-deb_cv1

biocontainers/roary v3.12.0dfsg-2-deb_cv1

biocontainers/snakemake v5.4.0-1-deb_cv1

biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

mirekphd/ml-cpu-r36-base latest

ashish1981/s390x-r-shiny latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 56

mesosphere/mesosphere-data-toolkit latest

biocontainers/imputeme vv1.0.7_cv1

biocontainers/isee-galaxy v3.13_cv1.0.0

ccdlstaging/dr_smasher 1.45.8

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v0.23.2

ocdr/dkube-datascience-rs-tf-cpu v2.0.0

ashish1981/s390x-clefos-shiny latest

ccdlstaging/dr_illumina 1.45.8

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

ashish1981/x86-rbase-shiny-plumber d300422

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

broadinstitute/terra-jupyter-gatk 0.0.13

mesosphere/mesosphere-jupyter-service latest

databrewllc/odk-form-extraction 6097023

araalinetworks/devproxy 0.9.91

dragonflyscience/niwaverse 2020-08-11

ccdlstaging/dr_compendia 1.45.8

rapporteket/dev nhn

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

broadinstitute/fungal_gatk4 gatk4.5.0.0

tercen/dartrusttidy 1.0.10

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dceoy/r-tidyverse latest

R with tidyverse

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0

nfcore/airrflowreport dev

dragonflyscience/sharknado 2024-06-10

recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.