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Package Usage : cran : VariantAnnotation

Explore the latest package usage data for VariantAnnotation in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 102
Total downloads: 59,775
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

hoonbiolab/hmftools v1.1

  • version: 1.38.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.32.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.46.0
Latest release: over 2 years ago - 160 downloads - 679 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.32.0
Latest release: over 4 years ago - 110 downloads - 828 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.44.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.40.0
Latest release: almost 3 years ago - 60 downloads - 2,274 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.20.2
Latest release: over 7 years ago - 165 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.26.1
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.44.1
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.44.1
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.46.0
Latest release: almost 3 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.46.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.26.1
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
almurphy/mungesumstats latest

  • version: 1.47.0
Latest release: almost 3 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.44.0
Latest release: about 3 years ago - 39 downloads - 598 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 1.44.1
Latest release: almost 3 years ago - 291 downloads - 218 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.36.0
Latest release: about 3 years ago - 28 downloads - 664 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.36.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
alexsickler/open-pedcan latest

  • version: 1.32.0
Latest release: about 3 years ago - 219 downloads - 864 dependencies
sparktx/gviz 1.40.1

  • version: 1.42.1
Latest release: about 3 years ago - 34 downloads - 288 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.44.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.45.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.44.1
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
apollodorus/polyglot v1

  • version: 1.44.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.46.0
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.44.0
Latest release: about 3 years ago - 18 downloads - 270 dependencies
kdgosik/main-gitpod latest

  • version: 1.44.1
Latest release: almost 3 years ago - 238 downloads - 1,820 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.44.0
Latest release: about 3 years ago - 25 downloads - 271 dependencies
breezykermo/gvis latest

  • version: 1.32.0
Latest release: over 5 years ago - 23 downloads - 1,619 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 1.40.0
Latest release: over 2 years ago - 54 downloads - 337 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.32.0
Latest release: about 3 years ago - 25 downloads - 325 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.32.0
Latest release: almost 4 years ago - 24 downloads - 718 dependencies
dhspence/docker-hiccompare latest

  • version: 1.32.0
Latest release: over 4 years ago - 137 downloads - 1,271 dependencies
hoonbiolab/hmftools_linx v1.23.1

  • version: 1.44.0
Latest release: almost 3 years ago - 22 downloads - 988 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.32.0
Latest release: about 6 years ago - 16 downloads - 2,128 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.44.1
Latest release: almost 3 years ago - 15 downloads - 1,038 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.46.0, 1.44.0
Latest release: over 2 years ago - 110 downloads - 1,150 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 1.44.1
Latest release: over 1 year ago - 510 downloads - 1,367 dependencies
winuthayanon/rstudio 4.3.0

  • version: 1.46.0
Latest release: over 2 years ago - 166 downloads - 2,687 dependencies
hoonbiolab/titan v1.1

  • version: 1.32.0
Latest release: over 4 years ago - 48 downloads - 754 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.40.0
Latest release: almost 3 years ago - 9 downloads - 1,347 dependencies
mbaardwijk/hmftools latest

  • version: 1.40.0
Latest release: almost 3 years ago - 52 downloads - 405 dependencies
hoonbiolab/hmftools_sv v.2.13.2

  • version: 1.44.0
Latest release: about 3 years ago - 39 downloads - 856 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.44.0
Latest release: about 3 years ago - 17 downloads - 1,616 dependencies
mdivr/chicago v2

  • version: 1.44.1
Latest release: almost 3 years ago - 49 downloads - 645 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.44.1
Latest release: almost 3 years ago - 34 downloads - 1,568 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.46.0
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
samplix/droplet-viewer-internal latest

  • version: 1.38.0
Latest release: almost 3 years ago - 57 downloads - 568 dependencies
wyangwu/r4.1.2 latest

  • version: 1.40.0
Latest release: over 2 years ago - 93 downloads - 827 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.44.1
Latest release: over 2 years ago - 139 downloads - 3,115 dependencies
bioxfu/xseurat2 latest

  • version: 1.44.0
Latest release: about 3 years ago - 79 downloads - 982 dependencies
haileyzhang/fragpipe-analyst v1.13

A Docker container of Fragpipe-Analyst

  • version: 1.44.1
Latest release: 9 months ago - 267 downloads - 1,511 dependencies
wlc27/dcanr v1

  • version: 1.44.0
Latest release: about 3 years ago - 94 downloads - 1,681 dependencies
hoonbiolab/hmftools_cnv v3.8.4

  • version: 1.44.0, 1.46.0
Latest release: over 2 years ago - 203 downloads - 985 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.32.0
Latest release: about 3 years ago - 49 downloads - 685 dependencies
gnwanne/decontx latest

  • version: 1.44.0
Latest release: about 3 years ago - 67 downloads - 938 dependencies
cgrlab/centos7_bfx 1.0.0

  • version: 1.44.1
Latest release: almost 3 years ago - 54 downloads - 1,457 dependencies
princessmaximacenter/gridss 2.13.2

  • version: 1.40.0
Latest release: over 2 years ago - 160 downloads - 801 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 1.46.0
Latest release: almost 2 years ago - 77 downloads - 1,356 dependencies
daemontus/software-cell-oracle latest

  • version: 1.46.0
Latest release: almost 3 years ago - 107 downloads - 1,013 dependencies
suimye/cage_box latest

  • version: 1.44.1
Latest release: almost 3 years ago - 19 downloads - 698 dependencies
mapostolides/test12345 latest

  • version: 1.32.0
Latest release: over 2 years ago - 12 downloads - 566 dependencies
ajhodgkinson/mitogwas latest

  • version: 1.46.0
Latest release: over 2 years ago - 114 downloads - 1,094 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.32.0
Latest release: about 4 years ago - 20,285 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.24.2
Latest release: over 3 years ago - 19,770 downloads - 11,684 dependencies
bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

  • version: 1.40.0
Latest release: 9 months ago - 52,691 downloads - 1,551 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.24.2
Latest release: over 3 years ago - 10,964 downloads - 12,259 dependencies
alexthiery/archr_hicdc 3.0

  • version: 1.40.0
Latest release: almost 3 years ago - 41 downloads - 822 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.40.0
Latest release: almost 3 years ago - 485 downloads - 3,517 dependencies
dhspence/docker-vep 93

  • version: 1.26.1
Latest release: almost 7 years ago - 87 downloads - 1,191 dependencies
bigomics/omicsplayground-base ub2204_v4

  • version: 1.40.0
Latest release: over 1 year ago - 1,636 downloads - 1,536 dependencies
khoulaha/jabba v1.0.0

  • version: 1.42.1
Latest release: about 3 years ago - 78 downloads - 2,527 dependencies
cmccornack/crmsc latest

  • version: 1.40.0
Latest release: over 2 years ago - 407 downloads - 1,476 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.24.2
Latest release: about 6 years ago - 71 downloads - 10,669 dependencies
kcapd/wings-genomics-full latest

  • version: 1.20.3
Latest release: about 5 years ago - 52 downloads - 1,502 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 1.46.0
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.20.3
Latest release: over 5 years ago - 184 downloads - 1,468 dependencies
rtibiocloud/neurogenomicslab_mungesumstats v1.7.10_6e16c82

  • version: 1.45.0
Latest release: over 2 years ago - 40 downloads - 1,293 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.26.1
Latest release: over 7 years ago - 325 downloads - 9,486 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.24.2
Latest release: about 7 years ago - 1,744 downloads - 9,716 dependencies
dhspence/docker-sicer latest

  • version: 1.26.1
Latest release: about 7 years ago - 813 downloads - 1,147 dependencies
dhspence/docker-wg-basestation latest

  • version: 1.32.0
Latest release: about 5 years ago - 54 downloads - 1,126 dependencies
gevrony/hidef-seq 3.0

  • version: 1.40.0
Latest release: about 1 year ago - 430 downloads - 1,205 dependencies
chunjiesamliu/scmocha latest

  • version: 1.46.0
Latest release: over 2 years ago - 74 downloads - 1,258 dependencies
gesiscss/binder-ngs-2ddocs-2d2018-2dggg201a-e01a75 18ae0fd4cd73f6d612f276af6afe6fdd663e2724

  • version: 1.32.0
Latest release: about 6 years ago - 14 downloads - 1,554 dependencies
mskilab/hetpileups latest

  • version: 1.36.0
Latest release: over 2 years ago - 174 downloads - 246 dependencies
etretiakov/rocker-session latest

  • version: 1.46.0
Latest release: almost 3 years ago - 81 downloads - 2,565 dependencies
ericsalomaki/mirna 071723

  • version: 1.40.0
Latest release: over 2 years ago - 26 downloads - 1,834 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.44.1
Latest release: over 2 years ago - 378 downloads - 2,660 dependencies
joshuatobin257/drop latest

  • version: 1.46.0
Latest release: over 2 years ago - 16 downloads - 840 dependencies
duclare123/vizcnv_dev latest

Visualization tool for WGS analysis

  • version: 1.44.1
Latest release: almost 3 years ago - 130 downloads - 920 dependencies
mtorresm55/r_env_4_1_0 v1.0

  • version: 1.40.0
Latest release: about 3 years ago - 24 downloads - 354 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 1.44.1
Latest release: almost 3 years ago - 153 downloads - 1,722 dependencies
skoyamamd/scoreinvhap latest

  • version: 1.40.0
Latest release: over 3 years ago - 36 downloads - 662 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 1.20.2
Latest release: over 7 years ago - 543 downloads - 576 dependencies
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1

  • version: 1.20.2
Latest release: over 7 years ago - 528 downloads - 568 dependencies