Package Usage : pypi : pysam
Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 422
Total downloads: 33,632,904
More details on packages.ecosyste.ms - JSON
broadinstitute/gatk 4.6.1.0
Official release repository for GATK versions 4.x
- version: 0.15.3
google/deepvariant 1.8.0
- version: 0.20.0
broadinstitute/oncotator 1.9.9.0
Oncotator images for releases from 1.9.0.0
- version: 0.9.0
broadinstitute/terra-jupyter-aou 2.1.13
- version: 0.20.0
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT
Official repository for nightly development builds of the GATK
- version: 0.15.3
nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
- version: 0.16.0.1
broadinstitute/viral-ngs 1.25.0
See: https://viral-ngs.readthedocs.io/en/latest/
- version: 0.15.0
snakemake/snakemake-tutorial v8.0.0
A container for running the official Snakemake tutorial
- version: 0.19.0
bactopia/bactopia 2.2.0
- version: 0.18.0
njaved/tf_peaks_processing latest
tf_peaks_processing
- version: 0.20.0
qdidiscoveryservices/crispresso2-biopy 2.3.0
Image for running largeAggregrate branch of CRISPResso2
- version: 0.19.1
almahmoud/galaxy bioc2023
- version: 0.17.0, 0.16.0.1
google/deepconsensus 1.2.0
- version: 0.19.0
genomicmedicinesweden/gms-artic-nanopore 0c599b9
- version: 0.16.0.1, 0.21.0
qdidiscoveryservices/bwa_samtools_biobambam2 2.0
- version: 0.16.0.1
almahmoud/galaxy-its latest
- version: 0.16.0.1
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest
- version: 0.15.4
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest
- version: 0.19.1
intelliseqngs/task_vcf-anno-freq-genome 3.0.1-chrY-and-the-rest
- version: 0.19.1
intelliseqngs/task_bam-filter-mismatch 1.4.1
- version: 0.15.3
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2
- version: 0.15.3
intelliseqngs/ubuntu-toolbox 18.04_v0.12
- version: 0.15.3
intelliseqngs/task_vcf-to-json-or-tsv 1.1.0
- version: 0.21.0, 0.20.0
intelliseqngs/task_vcf-anno-func-var 1.6.0
- version: 0.19.1
intelliseqngs/task_vcf-anno-func-gene 1.3.5
- version: 0.18.0
intelliseqngs/task_vcf-acmg-pvs1 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-bp1 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-pm5 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-ps1 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-ps3 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-bp5 2.0.2
- version: 0.19.1
intelliseqngs/task_vcf-acmg-pm1 3.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-pp2 2.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-bp4 3.0.0
- version: 0.19.1
intelliseqngs/task_vcf-acmg-pp3 3.0.0
- version: 0.19.1
intelliseqngs/gatk-4.1.9.0 1.0.0
- version: 0.15.3
intelliseqngs/task_vcf-anno-cosmic 2.1.6
- version: 0.15.3
intelliseqngs/pysam 1.0.2
- version: 0.15.4
intelliseqngs/task_vcf-detect-stats 2.2.0
- version: 0.15.4
intelliseqngs/task_vcf-anno-civic 1.2.7
- version: 0.19.1
dhspence/docker-smallrnaseq latest
- version: 0.11.2.2
intelliseqngs/task_vcf-anno-hpo 1.0.5
- version: 0.19.1
broadinstitute/pcawg_public latest
pcawg_public
- version: 0.9.0, 0.7.5
zhiliz/autoreporting v1.0.2
- version: 0.20.0
intelliseqngs/task_bed-to-interval-list 1.1.5
- version: 0.15.3
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0
- version: 0.19.1
qdidiscoveryservices/gatk-v2461_bwa_aws latest
- version: 0.15.3
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 0.17.0
gesiscss/binder-imperial-2dgenomics-2dfacility-2dscanpy-2dnotebook-2dimage-6f44d6 e9423c0c1f8a91c5a06d2023b6abfeee4fbe4c0b
- version: 0.16.0.1
nfcore/universc 1.2.4
Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline
- version: 0.12.0.1
evolbioinfo/ngphylogeny-galaxy v0.1.0
This repository contains tools and workflows used in NGPhylogeny.fr via galaxy.
- version: 0.14.1
intelliseqngs/resources longranger_v0.1
- version: 0.9.1, 0.13
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2
- version: 0.15.3
y9ch/bidseq rice
🧪 BID-seq for detecting pseudouridine modification on RNA
- version: 0.20.0
intelliseqngs/gsort 1.0.1
- version: 0.15.4
hoonbiolab/align_dna v1.3
- version: 0.16.0.1
doejgi/multidap 1.3.0
- version: 0.19.0
weisburd/expansion-hunter-v2 latest
- version: 0.20.0
hoonbiolab/hmftools v1.1
- version: 0.17.0
qdidiscoveryservices/bam_to_10x_counts latest
- version: 0.20.0
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0
- version: 0.15.3
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: 0.9.0
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest
- version: 0.20.0
intelliseqngs/smoove-grch38-no-alt 1.1.0
- version: 0.15.3
chgyi/bio 3.5.1
- version: 0.15.0
ctomlins/testuniv_update latest
- version: 0.15.3
intelliseqngs/lumpy 1.0.0
- version: 0.15.4
nfcore/spaceranger 2.1.0
- version: 0.16.0.1
broadinstitute/pcawg_full 7
- version: 0.12.0.1, 0.9.0
dhspence/docker-chipseq v1.0
- version: 0.14
evolbioinfo/covid-align latest
COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM
- version: 0.14.1
intelliseqngs/task_pgx-cyrius 1.1.0
- version: 0.15.4
hoonbiolab/aasuite v0.1477.3
- version: 0.15.2, 0.18.0
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest
- version: 0.15.3
hoonbiolab/hl_base v1.2
- version: 0.19.1
chgyi/metaware_rna_denovo latest
- version: 0.15.2
intelliseqngs/task_fq-bowtie 1.1.0
- version: 0.18.0
intelliseqngs/task_sv-anno-panel 1.1.0
- version: 0.15.4
intelliseqngs/collect-hs-metrics 1.0.0
- version: 0.13
intelliseqngs/gatk-4.2.4.1 1.0.1
- version: 0.15.3