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An open API service providing dependency metadata for docker images.

Package Usage : pypi : pysam

Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 422
Total downloads: 33,632,904
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 0.15.3
Latest release: 7 months ago - 40,521,415 downloads - 513 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.17.0
Latest release: about 2 years ago - 4,362 downloads - 1,464 dependencies
ctomlins/tellread_2022 latest

  • version: 0.15.3
Latest release: almost 3 years ago - 48 downloads - 711 dependencies
google/deepconsensus 1.2.0

  • version: 0.19.0
Latest release: over 2 years ago - 4,867 downloads - 178 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 0.16.0.1
Latest release: 8 months ago - 48,621 downloads - 738 dependencies
zavolab/scinpas_python v1.1.0

  • version: 0.18.0
Latest release: 4 months ago - 397 downloads - 242 dependencies
ontresearch/wf-somatic-snp sha86599ecdb46472d01e0b7c2704683f6aee8a82dd

  • version: 0.21.0
Latest release: over 1 year ago - 7,884 downloads - 127 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 0.19.1
Latest release: about 3 years ago - 47 downloads - 635 dependencies
intelliseqngs/annoghr 1.0.0

  • version: 0.15.4
Latest release: over 5 years ago - 57 downloads - 284 dependencies
biodancer/nasap_performance latest

write later

  • version: 0.18.0
Latest release: almost 3 years ago - 83 downloads - 2,006 dependencies
nbutter/star latest

RNASeq_FASTQ-Counts

  • version: 0.7.7
Latest release: over 5 years ago - 63 downloads - 434 dependencies
qdidiscoveryservices/docker-biopy latest

  • version: 0.18.0
Latest release: almost 4 years ago - 101 downloads - 700 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 0.15.3
Latest release: over 2 years ago - 112 downloads - 1,144 dependencies
snakemake/snakemake-tutorial v9.0.0

A container for running the official Snakemake tutorial

  • version: 0.19.0
Latest release: 4 months ago - 14,881 downloads - 346 dependencies
bactopia/bactopia 2.2.0

  • version: 0.18.0
Latest release: almost 3 years ago - 7,321 downloads - 561 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 0.21.0, 0.16.0.1
Latest release: about 2 years ago - 3,175 downloads - 153 dependencies
hkubal/clairs v0.4.3

  • version: 0.20.0
Latest release: 4 months ago - 4,523 downloads - 150 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.20.0
Latest release: almost 3 years ago - 90 downloads - 494 dependencies
unlhcc/cellranger-arc 2.0.2

  • version: 0.16.0.1
Latest release: over 2 years ago - 816 downloads - 235 dependencies
njaved/tf_peaks_processing latest

tf_peaks_processing

  • version: 0.20.0
Latest release: almost 3 years ago - 4,370 downloads - 97 dependencies
qdidiscoveryservices/crispresso2-biopy 2.3.0

Image for running largeAggregrate branch of CRISPResso2

  • version: 0.19.1
Latest release: over 1 year ago - 9,366 downloads - 181 dependencies
almahmoud/galaxy bioc2023

  • version: 0.17.0
Latest release: about 2 years ago - 2,631 downloads - 2,578 dependencies
hoonbiolab/hmftools v1.1

  • version: 0.17.0
Latest release: about 4 years ago - 1,322 downloads - 693 dependencies
intelliseqngs/task_vcf-select-var-somatic 1.0.0

  • version: 0.19.1
Latest release: almost 3 years ago - 54 downloads - 388 dependencies
staphb/homopolish 0.4.1

  • version: 0.16.0
Latest release: over 2 years ago - 302 downloads - 36 dependencies
anastacia9/earth latest

  • version: 0.19.0
Latest release: over 3 years ago - 94 downloads - 31 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 0.15.2, 0.9.0
Latest release: almost 3 years ago - 255 downloads - 586 dependencies
geedrn/dajin tensorflow

  • version: 0.15.3
Latest release: almost 3 years ago - 85 downloads - 539 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 0.15.3
Latest release: about 1 year ago - 186,109 downloads - 912 dependencies
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

  • version: 0.15.4
Latest release: over 2 years ago - 65,668 downloads - 418 dependencies
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

  • version: 0.19.1
Latest release: over 2 years ago - 36,271 downloads - 333 dependencies
nicksunderland/gwas2vcf v0.0.5

  • version: 0.15.2
Latest release: about 2 years ago - 164 downloads - 26 dependencies
intelliseqngs/task_vcf-to-json-or-tsv 1.1.0

  • version: 0.20.0
Latest release: about 2 years ago - 7,415 downloads - 233 dependencies
intelliseqngs/task_nipt-anno 1.2.0

  • version: 0.15.4
Latest release: about 3 years ago - 110 downloads - 102 dependencies
intelliseqngs/task_vcf-anno-func-var 1.6.0

  • version: 0.19.1
Latest release: over 2 years ago - 3,479 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-gene 1.3.5

  • version: 0.18.0
Latest release: over 2 years ago - 3,362 downloads - 315 dependencies
intelliseqngs/task_vcf-acmg-bp1 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,631 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pvs1 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,896 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps1 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,688 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp5 2.0.2

  • version: 0.19.1
Latest release: about 1 year ago - 3,601 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp2 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,618 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm1 3.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,753 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp4 3.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,598 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm5 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,598 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps3 2.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,566 downloads - 334 dependencies
intelliseqngs/task_vcf-acmg-pp3 3.0.0

  • version: 0.19.1
Latest release: over 1 year ago - 3,569 downloads - 333 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 0.15.3
Latest release: almost 5 years ago - 2,229 downloads - 967 dependencies
emvcaest/markerscan latest

  • version: 0.14.1
Latest release: over 2 years ago - 195 downloads - 526 dependencies
intelliseqngs/task_vcf-anno-civic 1.2.11

  • version: 0.19.1
Latest release: 3 months ago - 2,897 downloads - 332 dependencies
intelliseqngs/task_vcf-anno-hpo 1.0.5

  • version: 0.19.1
Latest release: over 2 years ago - 1,550 downloads - 235 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.11.2.2
Latest release: over 7 years ago - 862 downloads - 911 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 0.21.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
ctomlins/ragtag latest

  • version: 0.18.0
Latest release: over 3 years ago - 191 downloads - 12 dependencies
zhiliz/autoreporting v1.0.2

  • version: 0.20.0
Latest release: over 2 years ago - 20,093 downloads - 251 dependencies
ztang301/exph vHipSTR

  • version: 0.13, 0.21.0
Latest release: about 1 year ago - 5,000 downloads - 402 dependencies
ctomlins/testuniv latest

  • version: 0.15.3
Latest release: almost 4 years ago - 84 downloads - 536 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 0.15.3
Latest release: over 2 years ago - 1,025 downloads - 1,057 dependencies
kboltonlab/ch-toolkit v2.8.1

  • version: 0.21.0
Latest release: 7 months ago - 18,799 downloads - 169 dependencies
intelliseqngs/task_bam-pepper 1.0.0

  • version: 0.18.0
Latest release: over 2 years ago - 14,375 downloads - 366 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 0.19.1
Latest release: over 2 years ago - 6,586 downloads - 492 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 0.15.3
Latest release: almost 3 years ago - 403 downloads - 849 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 0.16.0.1
Latest release: about 4 years ago - 110 downloads - 828 dependencies
intelliseqngs/prodia_task_vcf-beagle-postproc 1.0.1

  • version: 0.19.1
Latest release: almost 3 years ago - 53 downloads - 388 dependencies
weisburd/expansion-hunter-v2 latest

  • version: 0.20.0
Latest release: almost 3 years ago - 211 downloads - 373 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 0.20.0
Latest release: over 2 years ago - 1,604 downloads - 251 dependencies
biocontainers/python-pbcommand v0.5.3-1-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 39 downloads - 180 dependencies
intelliseqngs/gsort 1.0.1

  • version: 0.15.4
Latest release: over 2 years ago - 357 downloads - 315 dependencies
intelliseqngs/task_imputing-quality 0.0.2

  • version: 0.15.4
Latest release: over 4 years ago - 40 downloads - 355 dependencies
biocontainers/python-pbgenomicconsensus v2.1.0-1-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 41 downloads - 184 dependencies
doejgi/multidap 1.3.0

  • version: 0.19.0
Latest release: almost 3 years ago - 1,379 downloads - 101 dependencies
dhspence/docker-fluff latest

  • version: 0.14
Latest release: almost 7 years ago - 59 downloads - 493 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 0.16.0.1
Latest release: about 4 years ago - 86 downloads - 840 dependencies
dhspence/gtc2vcf latest

  • version: 0.15.3
Latest release: about 6 years ago - 52 downloads - 161 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 0.16.0.1
Latest release: about 4 years ago - 36 downloads - 811 dependencies
hoonbiolab/ascat v1.1

  • version: 0.16.0.1
Latest release: about 4 years ago - 41 downloads - 792 dependencies
dhspence/docker-myeloseq 100121

  • version: 0.17.0
Latest release: about 4 years ago - 124 downloads - 416 dependencies
ontresearch/wf-somatic-methyl shaeb8f5280b11211ca331f909cc64603d9ae433fee

  • version: 0.21.0
Latest release: over 1 year ago - 1,427 downloads - 126 dependencies
intelliseqngs/acmg-pp3 latest

  • version: 0.15.3
Latest release: almost 6 years ago - 55 downloads - 265 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 0.19.1
Latest release: almost 3 years ago - 37 downloads - 926 dependencies
edg1983/megalodon v2.5.0

  • version: 0.20.0
Latest release: almost 3 years ago - 41 downloads - 305 dependencies
ctomlins/bcl2fastq latest

  • version: 0.14.1
Latest release: over 4 years ago - 58 downloads - 474 dependencies
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

  • version: 0.20.0
Latest release: over 2 years ago - 1,232 downloads - 252 dependencies
intelliseqngs/ubuntu-toolbox-22.04 1.0.3

  • version: 0.21.0
Latest release: over 2 years ago - 148 downloads - 389 dependencies
jpsmith5/peppro 0.10.2

  • version: 0.20.0
Latest release: almost 3 years ago - 82 downloads - 1,163 dependencies
nfcore/spaceranger 2.1.0

  • version: 0.16.0.1
Latest release: over 2 years ago - 2,084 downloads - 181 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 0.20.0
Latest release: almost 3 years ago - 215 downloads - 962 dependencies
mdivr/quarto v17.2

  • version: 0.21.0
Latest release: 7 months ago - 1,434 downloads - 2,693 dependencies
intelliseqngs/task_pgx-cyrius 1.1.0

  • version: 0.15.4
Latest release: over 3 years ago - 166 downloads - 257 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 0.15.2, 0.18.0
Latest release: over 2 years ago - 989 downloads - 681 dependencies
skoyamamd/ldsc latest

  • version: 0.20.0
Latest release: over 3 years ago - 63 downloads - 325 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 0.15.3
Latest release: almost 3 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 0.15.3
Latest release: about 4 years ago - 183 downloads - 1,057 dependencies