Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : biopython

Explore the latest package usage data for biopython in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 408
Total downloads: 32,873,459

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

  • version: 1.76
Latest release: 9 months ago - 40,063,891 downloads - 912 dependencies
broadinstitute/oncotator 1.9.9.0

Oncotator images for releases from 1.9.0.0

  • version: 1.66
Latest release: about 7 years ago - 245,210 downloads - 535 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.80
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.76
Latest release: 12 months ago - 186,109 downloads - 912 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 1.79
Latest release: 4 months ago - 48,015 downloads - 738 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 1.72
Latest release: almost 6 years ago - 25,469 downloads - 417 dependencies
broadinstitute/horsefish bacterialingest_v1.0.09-alpha

  • version: 1.79
Latest release: 11 months ago - 156,274 downloads - 780 dependencies
bactopia/bactopia 2.2.0

  • version: 1.80
Latest release: over 2 years ago - 7,088 downloads - 561 dependencies
qdidiscoveryservices/crispresso2-biopy 2.3.0

Image for running largeAggregrate branch of CRISPResso2

  • version: 1.78
Latest release: over 1 year ago - 8,803 downloads - 181 dependencies
google/deepconsensus 1.2.0

  • version: 1.81
Latest release: over 2 years ago - 4,261 downloads - 178 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 1.79
Latest release: almost 2 years ago - 3,175 downloads - 153 dependencies
kbase/index_runner2 1.9.21

  • version: 1.77
Latest release: over 1 year ago - 2,324 downloads - 69 dependencies
evolbioinfo/pastml v1.9.49

Ancestral character reconstruction and visualization for rooted phylogenetic trees

  • version: 1.79
Latest release: 10 months ago - 2,524 downloads - 115 dependencies
evolbioinfo/python-ml v.3.11.2

Python 3.8 libraries for simple machine learning

  • version: 1.78
Latest release: over 2 years ago - 1,716 downloads - 241 dependencies
biocontainers/conodictor v2.3.1_cv1

  • version: 1.79
Latest release: almost 4 years ago - 1,759 downloads - 258 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 1.70
Latest release: over 7 years ago - 1,193 downloads - 1,383 dependencies
nfcore/airrflowreport dev

  • version: 1.77
Latest release: over 2 years ago - 1,011 downloads - 409 dependencies
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

  • version: 1.76
Latest release: over 2 years ago - 65,014 downloads - 418 dependencies
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

  • version: 1.79
Latest release: about 2 years ago - 35,961 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-freq-genome 3.0.1-chrY-and-the-rest

  • version: 1.79
Latest release: over 2 years ago - 35,467 downloads - 388 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 1.76
Latest release: over 2 years ago - 22,283 downloads - 1,138 dependencies
nfcore/gitpod 3.2.0

  • version: 1.81
Latest release: 6 months ago - 26,178 downloads - 1,546 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 1.76
Latest release: over 2 years ago - 5,139 downloads - 1,140 dependencies
intelliseqngs/ubuntu-toolbox 18.04_v0.12

  • version: 1.75
Latest release: over 5 years ago - 5,016 downloads - 294 dependencies
intelliseqngs/task_vcf-anno-func-var 1.6.0

  • version: 1.79
Latest release: about 2 years ago - 3,479 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-gene 1.3.5

  • version: 1.79
Latest release: about 2 years ago - 3,288 downloads - 315 dependencies
intelliseqngs/task_vcf-acmg-pvs1 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,617 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp1 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,452 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm5 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,473 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps1 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,514 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps3 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,508 downloads - 334 dependencies
intelliseqngs/task_vcf-acmg-bp5 2.0.2

  • version: 1.79
Latest release: 11 months ago - 3,425 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm1 3.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,504 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp2 2.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,441 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp4 3.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,314 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp3 3.0.0

  • version: 1.79
Latest release: over 1 year ago - 3,278 downloads - 333 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 1.76
Latest release: over 4 years ago - 2,229 downloads - 967 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.1.6

  • version: 1.76
Latest release: over 1 year ago - 2,735 downloads - 346 dependencies
intelliseqngs/task_vcf-anno-civic 1.2.7

  • version: 1.79
Latest release: 5 months ago - 2,601 downloads - 333 dependencies
dhspence/docker-smallrnaseq latest

  • version: 1.70
Latest release: about 7 years ago - 833 downloads - 911 dependencies
doejgi/synbioqc-libqc 0.7.0

  • version: 1.79
Latest release: over 1 year ago - 1,146 downloads - 454 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 1.66
Latest release: over 8 years ago - 839 downloads - 1,368 dependencies
evolbioinfo/pangolin v3.1.16

https://github.com/cov-lineages/pangolin

  • version: 1.81, 1.80
Latest release: over 3 years ago - 1,205 downloads - 46 dependencies
evolbioinfo/python-evol v3.8.2

Python3 with libraries useful for phylogenetical analyses

  • version: 1.73
Latest release: about 5 years ago - 910 downloads - 107 dependencies
nextgenusfs/funannotate-slim v1.8.17

Base funannotate image (no databases)

  • version: 1.80
Latest release: over 1 year ago - 1,435 downloads - 261 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 1.76
Latest release: over 2 years ago - 978 downloads - 1,057 dependencies
biocontainers/mitohifi 3.0.0_cv1

  • version: 1.79
Latest release: over 2 years ago - 3,626 downloads - 559 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 1.79
Latest release: about 2 years ago - 6,584 downloads - 492 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.76
Latest release: over 2 years ago - 403 downloads - 849 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.78
Latest release: over 1 year ago - 3,981 downloads - 1,464 dependencies
dudwary/antismash-dev 7b

  • version: 1.78
Latest release: over 2 years ago - 377 downloads - 372 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 1.70
Latest release: about 5 years ago - 360 downloads - 1,305 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 1.76
Latest release: over 2 years ago - 340 downloads - 1,142 dependencies
intelliseqngs/gsort 1.0.1

  • version: 1.76
Latest release: almost 2 years ago - 345 downloads - 315 dependencies
doejgi/jaws-lastal 1.0.1

  • version: 1.79
Latest release: about 3 years ago - 394 downloads - 134 dependencies
doejgi/synbioqc-pbj 3.3.3

  • version: 1.81, 1.79
Latest release: 5 months ago - 974 downloads - 1,105 dependencies
doejgi/multidap 1.3.0

  • version: 1.78
Latest release: over 2 years ago - 1,317 downloads - 101 dependencies
doejgi/synbioqc-dual_barcode 1.3.9

version of SynBioQC PacBio sequence validation pipeline for highly similar synthetic constructs

  • version: 1.79
Latest release: about 1 year ago - 967 downloads - 1,113 dependencies
mirekphd/ml-cpu-py36-jup 20190218

  • version: 1.73
Latest release: over 6 years ago - 580 downloads - 2,424 dependencies
dockerymh/protprep 0.0.1

Protein Preparation

  • version: 1.79
Latest release: over 3 years ago - 220 downloads - 553 dependencies
mirekphd/ml-pred-py36-cuda90 20190826

  • version: 1.73
Latest release: almost 6 years ago - 447 downloads - 3,188 dependencies
evolbioinfo/sdrmhunter v0.2.1

SDRM detection with sierrapy

  • version: 1.70
Latest release: over 7 years ago - 273 downloads - 106 dependencies
bactopia/tools-hicap 1.7.1

  • version: 1.72
Latest release: about 4 years ago - 519 downloads - 223 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 1.76
Latest release: over 3 years ago - 179 downloads - 1,057 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 1.66
Latest release: over 7 years ago - 395 downloads - 865 dependencies
chgyi/bio 3.5.1

  • version: 1.72
Latest release: almost 7 years ago - 531 downloads - 1,077 dependencies
biocontainers/integron-finder v1.5.1_cv2

  • version: 1.66
Latest release: about 6 years ago - 173 downloads - 320 dependencies
intelliseqngs/lumpy 1.0.0

  • version: 1.76
Latest release: about 5 years ago - 165 downloads - 377 dependencies
broadinstitute/pcawg_full 7

  • version: 1.66
Latest release: almost 8 years ago - 303 downloads - 889 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 1.79
Latest release: about 2 years ago - 722 downloads - 681 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.76
Latest release: over 2 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/task_fq-bowtie 1.1.0

  • version: 1.79
Latest release: about 3 years ago - 182 downloads - 356 dependencies
intelliseqngs/task_sv-anno-panel 1.1.0

  • version: 1.76
Latest release: over 4 years ago - 171 downloads - 354 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.70
Latest release: over 5 years ago - 172 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 1.76
Latest release: over 2 years ago - 171 downloads - 1,118 dependencies
intelliseqngs/task_sv-annot-filter 1.0.1

  • version: 1.79
Latest release: over 2 years ago - 165 downloads - 388 dependencies
alperyilmaz/jupyterlab-binder latest

Docker image to be used in Binder

  • version: 1.75
Latest release: over 5 years ago - 123 downloads - 1,403 dependencies
dhspence/docker-hiccompare latest

  • version: 1.76
Latest release: about 4 years ago - 126 downloads - 1,271 dependencies
intelliseqngs/anno-frequencies-exome_grch38 1.0.0-chrY-and-the-rest

  • version: 1.76
Latest release: over 5 years ago - 128 downloads - 334 dependencies
mshaikh/alphafold v2.1

  • version: 1.79
Latest release: over 3 years ago - 169 downloads - 323 dependencies
anand7899/biopython latest

  • version: 1.76
Latest release: almost 3 years ago - 104 downloads - 323 dependencies