jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

rocker/tidyverse 4.3.2

Version-stable build of R, rstudio, and R packages

apache/zeppelin 0.11.0

Apache Zeppelin

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

rocker/verse 4.3.2

Adds tex & related publishing packages to version-locked tidyverse image

rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

bioconductor/bioconductor_docker devel-R-devel

Bioconductor Docker Images

rocker/shiny-verse 4.3.2

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

veupathdb/rserve 7

broadinstitute/viral-core latest

ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

ashish1981/x86-r-z-appln latest

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

ashish1981/shinyapp-sarb latest

broadinstitute/terra-jupyter-aou 8bf6b13

ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

rocker/ropensci latest

broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

rocker/ml 4.3.2

Docker images with R + GPU support for machine learning libraries

ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq dev

A docker image for nf-core/chipseq

ashish1981/s390x-r-appln-z latest

180a51c0/gh-action-buildapp latest

nfcore/mag dev

nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

rocker/ml-verse 4.3.2

broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

nfcore/rnafusion fusioninspector_2.8.0dev

A Docker image for the nf-core/rnafusion pipeline.

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

fazenda/rsmd 64c1b962-4-14

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

ashish1981/zreferenceimplementation d17052022

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

vanallenlab/sv-pipeline filter_gt_029fa3b

nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

biocontainers/assemblytics v1.0ds-1-deb_cv1

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

hzibraunschweig/sormas-rscript 3.5-5.2022.5

biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

biocontainers/nanook v1.33dfsg-1-deb_cv1

rocker/r-rmd latest

Rocker container for Rmarkdown packages

biocontainers/paleomix v1.2.13.3-1-deb_cv1

biocontainers/roary v3.12.0dfsg-2-deb_cv1

biocontainers/snakemake v5.4.0-1-deb_cv1

biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

artemklevtsov/r-alpine pkgdev

R docker images based on the alpine:latest

mirekphd/ml-cpu-r36-base latest

ashish1981/s390x-r-shiny latest

gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 27

tabbzi/terra-dogagingproject-data-curation latest

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

mesosphere/mesosphere-data-toolkit latest

biocontainers/imputeme vv1.0.7_cv1

biocontainers/isee-galaxy v3.13_cv1.0.0

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v1.1.1-tiji-test

ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

ashish1981/s390x-clefos-shiny latest

ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

patroonorg/patroondeps latest

gesiscss/binder-gesiscss-2dsmm-5fdemo-236470 dfd722278551f17b42f226ab5a196b2b4c58e298

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead