Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : Biostrings

Explore the latest package usage data for Biostrings in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 545
Total downloads: 2,524,793
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ccdlstaging/dr_illumina 1.45.8

  • version: 2.46.0
Latest release: over 2 years ago - 6,466 downloads - 893 dependencies
robertplayer/scidap-qiime2 stable

  • version: 2.66.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.62.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 2.70.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 2.66.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 2.62.0
Latest release: 5 months ago - 449 downloads - 1,733 dependencies
koki/tensor-projects-parasite 20220819

  • version: 2.64.0
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

  • version: 2.66.0
Latest release: about 3 years ago - 186 downloads - 451 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.62.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.60.2
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 2.66.0
Latest release: about 3 years ago - 90 downloads - 494 dependencies
btrspg/genekitr 0.0.1

  • version: 2.68.1
Latest release: over 1 year ago - 204 downloads - 1,987 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 2.68.1
Latest release: 4 months ago - 821 downloads - 739 dependencies
prismcmap/sushi v0.0.2

  • version: 2.58.0
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
weizhoujp/rchtc 4.3.0

  • version: 2.68.1
Latest release: over 2 years ago - 141 downloads - 738 dependencies
luisas/rannotation_forcats latest

  • version: 2.54.0
Latest release: over 5 years ago - 46 downloads - 89 dependencies
globusgenomics/picrust 1.0

  • version: 2.62.0
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.60.0, 2.60.2
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 2.64.1
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 2.54.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 2.46.0
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
tariship/dev_sync_directories latest

  • version: 2.66.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.74.1
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
hdsu/etbii2023 latest

  • version: 2.62.0
Latest release: about 3 years ago - 138 downloads - 358 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 2.60.0
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.66.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
rocker/ropensci 3.4.1

  • version: 2.48.0
Latest release: over 8 years ago - 88,870 downloads - 1,589 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 2.58.0
Latest release: about 4 years ago - 116 downloads - 318 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 2.48.0
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 2.68.1
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.68.1
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 2.66.0
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.62.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
jpdodson/dsrna_docker latest

  • version: 2.66.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
nathanprovin/cellcom 1.2.2

  • version: 2.68.1
Latest release: over 2 years ago - 189 downloads - 596 dependencies
seglh/exomedepth f4716ad

  • version: 2.64.1
Latest release: about 2 years ago - 1,680 downloads - 548 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 2.66.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 2.62.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 2.54.0
Latest release: about 4 years ago - 110 downloads - 828 dependencies
rtibiocloud/saige_gds v2.1.2_613afb4

  • version: 2.64.1
Latest release: about 2 years ago - 22 downloads - 1,172 dependencies
chriswyatt/chopgo latest

  • version: 2.62.0
Latest release: over 3 years ago - 47 downloads - 255 dependencies
robsyme/cosmo latest

  • version: 2.66.0
Latest release: about 3 years ago - 45 downloads - 543 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 2.64.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 2.48.0
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 2.62.0
Latest release: about 4 years ago - 61 downloads - 327 dependencies
js2264/fourdndata 1.1.0

  • version: 2.69.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.66.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.64.1
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 2.54.0
Latest release: almost 3 years ago - 37 downloads - 725 dependencies
koki/workflow 20210327

  • version: 2.58.0
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.66.0
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 2.66.0
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.67.0
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 2.62.0
Latest release: almost 3 years ago - 60 downloads - 2,274 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 2.66.0
Latest release: over 2 years ago - 86 downloads - 386 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 193 downloads - 427 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 2.68.1
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.63.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 165 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 2.48.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 2.68.1
Latest release: 11 months ago - 930 downloads - 1,625 dependencies
benolson/r_dada2_for_ris latest

  • version: 2.66.0
Latest release: over 2 years ago - 43 downloads - 657 dependencies
broadinstitute/pcawg_full 7

  • version: 2.44.2
Latest release: over 8 years ago - 420 downloads - 889 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.66.0
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
biocontainers/bioconductor-altcdfenvs v1-2.36.0-1-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 147 downloads - 415 dependencies
biocontainers/bioconductor-phyloseq v1.19.1-2-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 151 downloads - 485 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 147 downloads - 453 dependencies
mfsentma/atacseq latest

  • version: 2.62.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
biocontainers/bioconductor-biostrings v2.42.1-1-deb_cv1

  • version: 2.42.1
Latest release: over 7 years ago - 150 downloads - 396 dependencies
andrewrrelmore/genepi_vscode test

  • version: 2.66.0
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 2.66.0
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 2.66.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
chgyi/metaware_rna_denovo latest

  • version: 2.50.2
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 2.68.1
Latest release: over 2 years ago - 1,044 downloads - 784 dependencies
chlazaris/dge_env 0.1

  • version: 2.62.0
Latest release: over 2 years ago - 17 downloads - 320 dependencies
alexthiery/archr 3.1

  • version: 2.62.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
cjchen/gxuclass 1.0

  • version: 2.68.1
Latest release: over 2 years ago - 19 downloads - 657 dependencies
cjchen/tbtoolszone 2.0

  • version: 2.62.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
smemane20/error_thres_amd_64 latest

  • version: 2.68.0
Latest release: over 2 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 2.68.1
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 2.66.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 2.48.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 2.66.0
Latest release: almost 3 years ago - 62 downloads - 1,332 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 2.60.2
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 2.68.1
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
uvarc/rstudio tam5xe

  • version: 2.68.1
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
markshill/clustering_tree_building-env latest

  • version: 2.66.0
Latest release: about 3 years ago - 46 downloads - 1,416 dependencies
luisas/rde latest

  • version: 2.54.0
Latest release: about 5 years ago - 66 downloads - 549 dependencies
atttilacs/dsp_geomxtools latest

  • version: 2.62.0
Latest release: about 3 years ago - 114 downloads - 871 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 2.54.0
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
dvav/bioconductor latest

  • version: 2.68.1
Latest release: over 2 years ago - 72 downloads - 297 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 2.58.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 2.62.0
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
almurphy/mungesumstats latest

  • version: 2.69.1
Latest release: over 2 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 2.66.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
andrewatmp/qiime_unzip latest

  • version: 2.66.0
Latest release: over 2 years ago - 151 downloads - 598 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 2.68.1
Latest release: over 2 years ago - 293 downloads - 529 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 2.54.0
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 2.66.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies