robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20251014

weizhoujp/rchtc 4.3.0

tariship/dev_sync_directories latest

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

cheyne0328/rstudio zxy

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

qdidiscoveryservices/seurat_cell_annotation latest

koki/velocytor 20221015

alanocallaghan/high-dimensional-stats-r latest

koki/bindsc 20220609

uabbds/zebrafish_telencephalon_atlas_app 1.0.0

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

avi156/rocker-binder-upd 4.2.2

mlepetit/rnormalisation 1.0.0

luisas/rde latest

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

luisas/r_sc.simg latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

gyusikhwang/tgs v1

emersonchao/dsc180b latest

tercen/normalise_cytof_operator 0.2.3

brusconi/seurat new

stormgod/deepmaps-cpu latest

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

apollodorus/polyglot v1

ucigenomics/cellchatnotebook 2.1.2

nfancy/scflow 0.7.4

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

cliu97/r4.3_seurat latest

alexthiery/archr_seurat_signac_mega 3.2

yosuketanigawa/rstudio_yt latest

elynrfw/gerald-test latest

njjai/genebasis latest

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3

repbioinfo/transformgampoi latest

bioedge/edge_24_1_ubuntu18 20231115

jingxin/terrascpipe v0

fabianegli/scp-recommendations-2022 1.0

njjtemp/scrattch-mapping 4.2.0

jackiezhuqi/bio-rstudio latest

winuthayanon/rstudio 4.3.0

dabbleofdevops/r-datascience 4.2.2

crukmi/nas-app latest

crukmi/liana_tensor2 0.1.9

madhu99/sb6 latest

cgrlab/qiime2 2023.5

jonasmrr/scrnaseq-pipeline latest

btrspg/vscode-dkd-env latest

alleninst/arrow_scrattch_hmapping_on_hpc latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

felixschlesinger/assign_types v0.2

gaspardr/r-env test

My R environment for analyses and development

ycli1995/bioinfo_dev 1.1.0

ucigenomics/spatiallibd latest

tercen/compensate_cytof_operator 0.0.7

wyangwu/r4.1.2 latest

compbiocore/jupyterhub-docker-images-jh_image 20230524

bioxfu/xseurat2 latest

wlc27/dcanr v1

tercen/tercen-studio-flowsuite 3.15-6

xjezzuuuu/setinfo-unibit-jupyter latest

robertplayer/scidap-genelists v5.0.0

vidhyagnanasekaran/rocker-single-cell v1

bicore/scrattch_mapping 0.51

cwong23/stx_env latest

Environment for spatial pipeline

gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

luisas/r_sc latest

gnwanne/decontx latest

buddej/scshc 0.1.0

weizhoujp/r-chtc-v1 latest

daemontus/software-cell-oracle latest

winuthayanon/seurat 4.3.0

nilesh0404/st_visualizer m1_0.1.2

apoorvababu/scviewerlite latest

Light version of SeuratViewer, an R Shiny website for viewing single cell RNA-Seq data

louisk92/spapros_genebasis v1.0

bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

biocontainers/isee-galaxy v3.13_cv1.0.0

ocdr/ds-apps 1.0.43

denglab/vpfkit_base latest

cplaisier/ccafv2_extra latest

porchard/decontx 20230104

broadinstitute/terra-jupyter-aou 2.1.13