Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : AnnotationDbi

Explore the latest package usage data for AnnotationDbi in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 462
Total downloads: 1,635,595

More details on packages.ecosyste.ms - JSON

veupathdb/rserve 7

  • version: 1.60.2
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.40.0
Latest release: 12 months ago - 124,831 downloads - 1,028 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 1.40.0
Latest release: over 2 years ago - 102,887 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.60.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.40.0
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.40.0
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.48.0
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.50.0
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.46.0
Latest release: over 5 years ago - 38,314 downloads - 559 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.62.2
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.48.0
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.58.0
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.40.0
Latest release: 12 months ago - 14,674 downloads - 894 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.58.0
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.55.1
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.40.0
Latest release: 12 months ago - 4,929 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.52.0
Latest release: almost 4 years ago - 3,040 downloads - 1,044 dependencies
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.40.0
Latest release: 12 months ago - 3,448 downloads - 893 dependencies
dhspence/docker-biscuit latest

  • version: 1.42.1
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.40.0
Latest release: 12 months ago - 2,332 downloads - 877 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.48.0
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: 1.44.0
Latest release: over 3 years ago - 25,614 downloads - 354 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.52.0
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.48.0
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.44.0, 1.42.1
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 1.40.0
Latest release: about 6 years ago - 715 downloads - 2,000 dependencies
prismcmap/depmap_versions dd55695d58fb

  • version: 1.52.0
Latest release: 11 months ago - 1,452 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.42.1
Latest release: almost 6 years ago - 702 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.42.1
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.42.1
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
prismcmap/drc-module robust_DRC

  • version: 1.52.0
Latest release: over 1 year ago - 539 downloads - 647 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 1.60.2
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 1.42.1
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.58.0
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.56.2
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
prismcmap/norm-module 26be7aa8ab48

  • version: 1.52.0
Latest release: almost 2 years ago - 380 downloads - 633 dependencies
dhspence/docker-basestation latest

  • version: 1.42.1
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.50.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
veitveit/complexbrowser release-1.6

  • version: 1.64.1, 1.60.0
Latest release: 12 months ago - 316 downloads - 1,296 dependencies
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

  • version: 1.60.0
Latest release: almost 2 years ago - 279 downloads - 381 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 1.42.1
Latest release: over 6 years ago - 271 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 1.48.0
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 502 downloads - 576 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 529 downloads - 457 dependencies
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 522 downloads - 498 dependencies
biocontainers/bioconductor-biomart v2.30.0-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 519 downloads - 424 dependencies
dhspence/docker-ichor latest

  • version: 1.42.1
Latest release: over 6 years ago - 236 downloads - 961 dependencies
biocontainers/bioconductor-annotate v1.52.1dfsg-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 520 downloads - 426 dependencies
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 477 downloads - 568 dependencies
biocontainers/bioconductor-go.db v3.4.0-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 517 downloads - 418 dependencies
biocontainers/bioconductor-geneplotter v1.52.0-2-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 517 downloads - 430 dependencies
koki/sctensor-experiments 20220208

  • version: 1.56.2
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 1.50.3
Latest release: about 4 years ago - 206 downloads - 452 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.54.1
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 1.63.2
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 1.60.0
Latest release: about 2 years ago - 262 downloads - 766 dependencies
prismcmap/sushi develop

  • version: 1.52.0
Latest release: 10 months ago - 221 downloads - 723 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.54.1, 1.54.0
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 156 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.42.1
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.40.0
Latest release: almost 7 years ago - 153 downloads - 633 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 155 downloads - 523 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 140 downloads - 453 dependencies
biocontainers/bioconductor-annotationhub v2.6.4-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 139 downloads - 459 dependencies
biocontainers/bioconductor-genefilter v1.56.0-1-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 133 downloads - 428 dependencies
biocontainers/bioconductor-annotationdbi v1.36.1-2-deb_cv1

  • version: 1.36.1
Latest release: over 6 years ago - 134 downloads - 416 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.44.0
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.42.1
Latest release: over 6 years ago - 134 downloads - 9,302 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.42.1
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
recetox/xmsannotator latest

  • version: 1.50.3
Latest release: over 3 years ago - 113 downloads - 448 dependencies
dhspence/docker-hiccompare latest

  • version: 1.48.0
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.55.2
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
atttilacs/dsp_geomxtools latest

  • version: 1.56.2
Latest release: about 2 years ago - 114 downloads - 871 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.36.2
Latest release: about 4 years ago - 103 downloads - 1,468 dependencies
atttilacs/seurat_big latest

  • version: 1.56.2
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
recetox/recetox-xmsannotator october-conda0

  • version: 1.54.0
Latest release: about 3 years ago - 95 downloads - 484 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.42.1
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
jafoltz/scclassify latest

  • version: 1.56.2
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
crukmi/mesa main

  • version: 1.59.1
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.56.2
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
veitveit/isoprot latest

  • version: 1.44.0
Latest release: over 5 years ago - 86 downloads - 2,182 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.54.1
Latest release: about 2 years ago - 79 downloads - 2,131 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 1.60.0
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
hdsu/etbii2023 latest

  • version: 1.56.2
Latest release: almost 2 years ago - 73 downloads - 358 dependencies
vanessa/rstudio-neuro latest

Dockerized rstudio with some statistics and neuro packages!

  • version: 1.40.0
Latest release: almost 7 years ago - 66 downloads - 199 dependencies