Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : pyfaidx

Explore the latest package usage data for pyfaidx in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 93
Total downloads: 56,430

More details on packages.ecosyste.ms - JSON

njaved/tf_peaks_processing latest

tf_peaks_processing

  • version: 0.7.1
Latest release: almost 2 years ago - 4,351 downloads - 97 dependencies
almahmoud/galaxy bioc2023

  • version: 0.6.3.1, 0.5.9.5
Latest release: about 1 year ago - 2,440 downloads - 2,578 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 0.7.2.1
Latest release: about 1 year ago - 2,025 downloads - 153 dependencies
sanogenetics/illumina2vcf 1.2.0

  • version: 0.7.0
Latest release: over 1 year ago - 7,856 downloads - 314 dependencies
almahmoud/galaxy-its latest

  • version: 0.5.9.5
Latest release: over 3 years ago - 872 downloads - 2,571 dependencies
nfcore/gitpod 2.11.1

  • version: 0.7.2.1
Latest release: 11 months ago - 12,300 downloads - 1,546 dependencies
nfcore/tools 2.11.1

Python package with helper tools for the nf-core community. https://nf-co.re/tools

  • version: 0.7.2.1
Latest release: 11 months ago - 4,955 downloads - 404 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.4.9.2
Latest release: over 6 years ago - 789 downloads - 911 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.7.1
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 0.7.1
Latest release: over 1 year ago - 588 downloads - 251 dependencies
intelliseqngs/smoove-grch38-no-alt 1.1.0

  • version: 0.5.5.2
Latest release: about 3 years ago - 194 downloads - 540 dependencies
nfcore/spaceranger 2.1.0

  • version: 0.5.9.5
Latest release: over 1 year ago - 1,446 downloads - 181 dependencies
dhspence/docker-guideseq latest

  • version: 0.2.7
Latest release: about 4 years ago - 139 downloads - 487 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 0.6.4
Latest release: over 1 year ago - 146 downloads - 681 dependencies
chgyi/metaware_rna_denovo latest

  • version: 0.5.5.2
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
dhspence/docker-manta 1.5.0

  • version: 0.4.9.2
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 0.5.8
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
qdidiscoveryservices/cellranger_mkfq latest

  • version: 0.5.9.1
Latest release: almost 4 years ago - 120 downloads - 545 dependencies
gesiscss/binder-mirnylab-2dcooler-2dbinder-e6ea7d 625538ad3dfe95fd4b9f08f0f2ba3b21c8a9e4cc

  • version: 0.5.9.2
Latest release: almost 4 years ago - 108 downloads - 1,731 dependencies
dhspence/docker-cnvkit latest

  • version: 0.5.3.1
Latest release: over 6 years ago - 97 downloads - 542 dependencies
intelliseqngs/smoove-hg38 1.1.0

  • version: 0.5.5.2
Latest release: about 3 years ago - 88 downloads - 540 dependencies
hoonbiolab/cnvkit v1.1

  • version: 0.5.9.1
Latest release: about 3 years ago - 83 downloads - 817 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.7.1
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
anastacia9/earth latest

  • version: 0.6.4
Latest release: over 2 years ago - 75 downloads - 31 dependencies
gene110/dismir_keras 2.3.1

  • version: 0.7.1
Latest release: about 2 years ago - 65 downloads - 481 dependencies
ctomlins/liftoff latest

  • version: 0.5.8
Latest release: over 2 years ago - 97 downloads - 297 dependencies
dhspence/docker-vep 93

  • version: 0.4.9.2
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 0.4.7.1
Latest release: almost 6 years ago - 55 downloads - 705 dependencies
staphb/tostadas latest

  • version: 0.7.1
Latest release: almost 2 years ago - 192 downloads - 236 dependencies
ctomlins/rna-seq-pipeline latest

  • version: 0.6.3.1
Latest release: about 3 years ago - 51 downloads - 498 dependencies
intelliseqngs/smoove 1.0.0

  • version: 0.5.5.2
Latest release: about 4 years ago - 47 downloads - 540 dependencies
chriswyatt/jcvi version2.0

  • version: 0.7.1
Latest release: about 2 years ago - 121 downloads - 798 dependencies
mlepetit/cellranger 1.1

  • version: 0.5.9.1
Latest release: almost 2 years ago - 44 downloads - 287 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.6.1
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
alexanrna/souporcell v2.4.0.final_v2

  • version: 0.6.2
Latest release: over 2 years ago - 44 downloads - 596 dependencies
gesiscss/binder-carjed-2ddoomsayer-85bbc5 651e939aaf1eaaf8af63957b67b7b5146ab90d6e

  • version: 0.5.7
Latest release: almost 5 years ago - 28 downloads - 1,660 dependencies
dhspence/docker-myeloseq 100121

  • version: 0.6.2
Latest release: about 3 years ago - 31 downloads - 416 dependencies
jpsmith5/peppro latest

  • version: 0.7.1
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
ocdr/parabricks v2.5.0

  • version: 0.5.8
Latest release: over 4 years ago - 36 downloads - 165 dependencies
tom418/kaist-ina-mutcall 2.0

  • version: 0.7.1, 0.7.2.1
Latest release: over 1 year ago - 44 downloads - 497 dependencies
sheddn/bioinformatics-tools latest

  • version: 0.7.2.1
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
biodancer/nasap_performance latest

write later

  • version: 0.6.3.1
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
kaizhang/scatac-bench 0.2.1

  • version: 0.7.2.1
Latest release: about 1 year ago - 55 downloads - 588 dependencies
ontresearch/wf-amplicon sha7d1766bb6196d4c370d6bd45d89154e7c1fef0b3

  • version: 0.7.2.1
Latest release: 11 months ago - 5,529 downloads - 206 dependencies
johnyaku/souporcell test

Extension to the original souporcell pipeline:

  • version: 0.6.2
Latest release: about 1 year ago - 61 downloads - 780 dependencies
aminhaghparast/genomics21 2.12

  • version: 0.6.4, 0.5.9.5
Latest release: almost 2 years ago - 12 downloads - 522 dependencies
jessica23h/minio compress

  • version: 0.7.1
Latest release: almost 2 years ago - 54 downloads - 143 dependencies
songyizhe/cellranger 7.1.0

  • version: 0.7.1
Latest release: almost 2 years ago - 216 downloads - 518 dependencies
seglh/dx_api_bridge latest

https://github.com/moka-guys/dx_api_bridge

  • version: 0.7.1
Latest release: about 3 years ago - 179 downloads - 274 dependencies
steepale/python_base 3.8.16

  • version: 0.7.1
Latest release: almost 2 years ago - 39 downloads - 81 dependencies
luisas/tfcpu latest

  • version: 0.6.4
Latest release: almost 3 years ago - 12 downloads - 82 dependencies
hubentu/survirus latest

  • version: 0.7.1
Latest release: almost 2 years ago - 12 downloads - 49 dependencies
hugtools/hugtools_primer4hugbuild 0.3.0-beta-4

  • version: 0.7.1, 0.6.3.1
Latest release: almost 2 years ago - 15 downloads - 218 dependencies
dhspence/docker-baseimagewithconda latest

  • version: 0.6.1
Latest release: about 3 years ago - 11 downloads - 67 dependencies
prosyslab/bug-bench-cnvkit 20210806

  • version: 0.5.8
Latest release: over 3 years ago - 12 downloads - 45 dependencies
prosyslab/bug-bench-python3-gffutils 20210805

  • version: 0.5.8
Latest release: over 3 years ago - 10 downloads - 18 dependencies
smk5g5/cnvkit latest

  • version: 0.7.1
Latest release: almost 2 years ago - 10 downloads - 108 dependencies
lucapandolfini/peakachu 2.1

  • version: 0.7.1
Latest release: almost 2 years ago - 10 downloads - 67 dependencies
erictdawson/clair3 2023-Jul-05

  • version: 0.7.1, 0.7.2.1
Latest release: over 1 year ago - 87 downloads - 112 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 0.6.2
Latest release: about 3 years ago - 10 downloads - 397 dependencies
mhooper718/snap2scvi v1

  • version: 0.7.2.1
Latest release: over 1 year ago - 48 downloads - 1,164 dependencies
crukmi/cnvkit 0.9.9--pyhdfd78af_0_md2

  • version: 0.5.9.5
Latest release: about 2 years ago - 10 downloads - 47 dependencies
dhspence/docker-longread latest

  • version: 0.7.1
Latest release: almost 2 years ago - 9 downloads - 155 dependencies
mbaardwijk/nf-core-somaticcnv latest

  • version: 0.7.1
Latest release: almost 2 years ago - 9 downloads - 118 dependencies
aminhaghparast/ieo V.18

  • version: 0.5.9.5, 0.6.4, 0.6.0
Latest release: over 1 year ago - 9 downloads - 181 dependencies
nbutter/cellranger ubuntu1604

  • version: 0.7.1
Latest release: almost 2 years ago - 19 downloads - 38 dependencies
koichihigashi/ubuntu hicexplorer

  • version: 0.7.2.1
Latest release: over 1 year ago - 8 downloads - 1,066 dependencies
sydneyinformaticshub/spaceranger centos7

  • version: 0.7.0
Latest release: over 1 year ago - 28 downloads - 336 dependencies
yagihamada/tensorflow-gpu latest

  • version: 0.7.1
Latest release: almost 2 years ago - 9 downloads - 152 dependencies
ontresearch/wf-amplicon-clair3 mr135_shaa51744fee019e824a90b298551a447c733fe46f9

  • version: 0.7.1
Latest release: over 1 year ago - 8 downloads - 108 dependencies
crpeters/whatshap 1.7

  • version: 0.7.1
Latest release: almost 2 years ago - 9 downloads - 26 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 0.6.4
Latest release: about 2 years ago - 6 downloads - 628 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 0.7.2.1
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies
mdivr/quarto v3

  • version: 0.7.2.1
Latest release: over 1 year ago - 239 downloads - 1,613 dependencies
unlhcc/cellranger-arc e76e42755808

  • version: 0.5.9.5
Latest release: 12 months ago - 118 downloads - 235 dependencies
ygidtu/trackplotweb 0.2.8

  • version: 0.7.2.1
Latest release: over 1 year ago - 12 downloads - 490 dependencies
soymintc/mmctm-pythonscripts latest

  • version: 0.6.1
Latest release: almost 2 years ago - 10 downloads - 305 dependencies
hugtools/primer4hugbuild 0.4.2

  • version: 0.6.3.1
Latest release: over 1 year ago - 12 downloads - 470 dependencies
marchment/genomicus v3.0

  • version: 0.7.1
Latest release: almost 2 years ago - 8 downloads - 427 dependencies
ontresearch/wf-somatic-snp shaaf35fcd44952929294fd39f7c22dc9c4b7f95f0e

  • version: 0.7.2.1
Latest release: 11 months ago - 3,263 downloads - 127 dependencies