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Package Usage : pypi : pyfaidx

Explore the latest package usage data for pyfaidx in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 93
Total downloads: 56,430
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.7.1
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
seglh/dx_api_bridge latest

https://github.com/moka-guys/dx_api_bridge

  • version: 0.7.1
Latest release: over 4 years ago - 222 downloads - 274 dependencies
ontresearch/wf-somatic-snp sha86599ecdb46472d01e0b7c2704683f6aee8a82dd

  • version: 0.7.2.1
Latest release: over 1 year ago - 8,268 downloads - 127 dependencies
biodancer/nasap_performance latest

write later

  • version: 0.6.3.1
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
jessica23h/minio compress

  • version: 0.7.1
Latest release: about 3 years ago - 95 downloads - 143 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 0.7.2.1
Latest release: over 2 years ago - 3,175 downloads - 153 dependencies
hkubal/clairs v0.4.4

  • version: 0.7.1
Latest release: 2 months ago - 4,888 downloads - 150 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.7.1
Latest release: about 3 years ago - 90 downloads - 494 dependencies
unlhcc/cellranger-arc 2.0.2

  • version: 0.5.9.5
Latest release: almost 3 years ago - 816 downloads - 235 dependencies
njaved/tf_peaks_processing latest

tf_peaks_processing

  • version: 0.7.1
Latest release: about 3 years ago - 4,370 downloads - 97 dependencies
almahmoud/galaxy bioc2023

  • version: 0.6.3.1, 0.5.9.5
Latest release: over 2 years ago - 2,721 downloads - 2,578 dependencies
sanogenetics/illumina2vcf 1.2.0

  • version: 0.7.0
Latest release: over 2 years ago - 21,437 downloads - 314 dependencies
anastacia9/earth latest

  • version: 0.6.4
Latest release: over 3 years ago - 106 downloads - 31 dependencies
nfcore/gitpod 3.3.2

  • version: 0.7.2.1
Latest release: 7 months ago - 34,315 downloads - 1,545 dependencies
nfcore/tools 3.3.2

Python package with helper tools for the nf-core community. https://nf-co.re/tools

  • version: 0.7.2.1
Latest release: 7 months ago - 18,159 downloads - 404 dependencies
emvcaest/markerscan latest

  • version: 0.7.2.1
Latest release: almost 3 years ago - 195 downloads - 526 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.4.9.2
Latest release: over 7 years ago - 862 downloads - 911 dependencies
raghukirannavipoint/galaxytools june23

  • version: 0.7.2.1
Latest release: over 2 years ago - 157 downloads - 163 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 0.7.1
Latest release: over 2 years ago - 1,604 downloads - 251 dependencies
dhspence/docker-myeloseq 100121

  • version: 0.6.2
Latest release: over 4 years ago - 173 downloads - 416 dependencies
gesiscss/binder-carjed-2ddoomsayer-85bbc5 651e939aaf1eaaf8af63957b67b7b5146ab90d6e

  • version: 0.5.7
Latest release: about 6 years ago - 34 downloads - 1,660 dependencies
ontresearch/wf-somatic-methyl shaeb8f5280b11211ca331f909cc64603d9ae433fee

  • version: 0.7.2.1
Latest release: over 1 year ago - 1,634 downloads - 126 dependencies
jpsmith5/peppro 0.10.2

  • version: 0.7.1
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
nfcore/spaceranger 2.1.0

  • version: 0.5.9.5
Latest release: over 2 years ago - 2,084 downloads - 181 dependencies
mdivr/quarto v17.2

  • version: 0.7.2.1
Latest release: 10 months ago - 1,582 downloads - 2,693 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 0.6.4
Latest release: over 2 years ago - 1,072 downloads - 681 dependencies
ocdr/parabricks v2.5.0

  • version: 0.5.8
Latest release: almost 6 years ago - 106 downloads - 165 dependencies
intelliseqngs/smoove-grch38-no-alt 1.1.0

  • version: 0.5.5.2
Latest release: about 4 years ago - 383 downloads - 540 dependencies
gene110/dismir_keras 2.3.1

  • version: 0.7.1
Latest release: over 3 years ago - 65 downloads - 481 dependencies
dhspence/docker-guideseq latest

  • version: 0.2.7
Latest release: over 5 years ago - 199 downloads - 487 dependencies
chgyi/metaware_rna_denovo latest

  • version: 0.5.5.2
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
ctomlins/rna-seq-pipeline latest

  • version: 0.6.3.1
Latest release: about 4 years ago - 81 downloads - 498 dependencies
dhspence/docker-manta 1.5.0

  • version: 0.4.9.2
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
qdidiscoveryservices/cellranger_mkfq 5.0.1

  • version: 0.5.9.1
Latest release: about 5 years ago - 161 downloads - 545 dependencies
steepale/python_base 3.8.16

  • version: 0.7.1
Latest release: almost 3 years ago - 50 downloads - 81 dependencies
luisas/tfcpu latest

  • version: 0.6.4
Latest release: almost 4 years ago - 34 downloads - 82 dependencies
dhspence/docker-rstudio-python latest

  • version: 0.7.2.1
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
erictdawson/clair3 2023-Jul-05

  • version: 0.7.2.1, 0.7.1
Latest release: over 2 years ago - 105 downloads - 112 dependencies
kaizhang/scatac-bench 0.2.1

  • version: 0.7.2.1
Latest release: over 2 years ago - 440 downloads - 588 dependencies
hubentu/survirus latest

  • version: 0.7.1
Latest release: about 3 years ago - 38 downloads - 49 dependencies
hugtools/hugtools_primer4hugbuild 0.3.0-beta-4

  • version: 0.6.3.1, 0.7.1
Latest release: almost 3 years ago - 76 downloads - 218 dependencies
mhooper718/snap2scvi v1

  • version: 0.7.2.1
Latest release: over 2 years ago - 77 downloads - 1,164 dependencies
dhspence/docker-baseimagewithconda latest

  • version: 0.6.1
Latest release: over 4 years ago - 44 downloads - 67 dependencies
prosyslab/bug-bench-cnvkit 20210806

  • version: 0.5.8
Latest release: over 4 years ago - 22 downloads - 45 dependencies
prosyslab/bug-bench-python3-gffutils 20210805

  • version: 0.5.8
Latest release: over 4 years ago - 32 downloads - 18 dependencies
yunagaoka/imputation 0.1.8

  • version: 0.6.2, 0.7.0
Latest release: over 2 years ago - 59 downloads - 1,926 dependencies
tom418/kaist-ina-mutcall 2.0

  • version: 0.7.1, 0.7.2.1
Latest release: almost 3 years ago - 84 downloads - 497 dependencies
smk5g5/cnvkit latest

  • version: 0.7.1
Latest release: about 3 years ago - 26 downloads - 108 dependencies
lucapandolfini/peakachu 2.1

  • version: 0.7.1
Latest release: about 3 years ago - 48 downloads - 67 dependencies
johnyaku/souporcell test

Extension to the original souporcell pipeline:

  • version: 0.6.2
Latest release: about 2 years ago - 193 downloads - 780 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 0.6.2
Latest release: over 4 years ago - 66 downloads - 397 dependencies
aminhaghparast/genomics21 2.12

  • version: 0.5.9.5, 0.6.4
Latest release: about 3 years ago - 12 downloads - 522 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 0.6.4
Latest release: over 3 years ago - 6 downloads - 628 dependencies
ygidtu/trackplot 0.5.3

  • version: 0.7.2.1
Latest release: 10 months ago - 233 downloads - 102 dependencies
crukmi/cnvkit 0.9.9--pyhdfd78af_0_md2

  • version: 0.5.9.5
Latest release: over 3 years ago - 26 downloads - 47 dependencies
sheddn/bioinformatics-tools latest

  • version: 0.7.2.1
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
dhspence/docker-hiccompare latest

  • version: 0.5.8
Latest release: over 4 years ago - 137 downloads - 1,271 dependencies
ygidtu/trackplotweb 0.2.8

  • version: 0.7.2.1
Latest release: over 2 years ago - 47 downloads - 490 dependencies
dhspence/docker-longread latest

  • version: 0.7.1
Latest release: about 3 years ago - 45 downloads - 155 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 0.7.2.1
Latest release: over 2 years ago - 282 downloads - 1,068 dependencies
pcm32/galaxy-min 22.05_node

  • version: 0.7.0
Latest release: over 2 years ago - 69 downloads - 1,845 dependencies
marchment/genomicus v3.0

  • version: 0.7.1
Latest release: almost 3 years ago - 34 downloads - 427 dependencies
jb63sanger/targeton_despynr 0.0.1

  • version: 0.7.2.1
Latest release: over 2 years ago - 61 downloads - 440 dependencies
hoonbiolab/cnvkit v1.1

  • version: 0.5.9.1
Latest release: over 4 years ago - 257 downloads - 817 dependencies
soymintc/mmctm-pythonscripts latest

  • version: 0.6.1
Latest release: almost 3 years ago - 46 downloads - 305 dependencies
alexanrna/souporcell v2.4.0.final_v2

  • version: 0.6.2
Latest release: almost 4 years ago - 195 downloads - 596 dependencies
ontresearch/wf-amplicon sha0ba67476938520e6f132759780d0a0e902925c59

  • version: 0.7.2.1
Latest release: over 1 year ago - 24,566 downloads - 206 dependencies
songyizhe/cellranger 7.1.0

  • version: 0.7.1
Latest release: about 3 years ago - 230 downloads - 518 dependencies
sridnona/isoquant 3.1.1

  • version: 0.7.1
Latest release: about 3 years ago - 173 downloads - 90 dependencies
ctomlins/liftoff latest

  • version: 0.5.8
Latest release: over 3 years ago - 321 downloads - 297 dependencies
dhspence/docker-vep 93

  • version: 0.4.9.2
Latest release: almost 7 years ago - 87 downloads - 1,191 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 0.4.7.1
Latest release: about 7 years ago - 152 downloads - 705 dependencies
staphb/tostadas 4.0.0

  • version: 0.7.1
Latest release: about 1 year ago - 816 downloads - 236 dependencies
intelliseqngs/smoove 1.0.0

  • version: 0.5.5.2
Latest release: over 5 years ago - 55 downloads - 540 dependencies
chriswyatt/jcvi version2.0

  • version: 0.7.1
Latest release: over 3 years ago - 241 downloads - 798 dependencies
mlepetit/cellranger 9.0.1

  • version: 0.5.9.1
Latest release: 8 months ago - 85 downloads - 287 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.6.1
Latest release: over 4 years ago - 71 downloads - 1,213 dependencies
gesiscss/binder-mirnylab-2dcooler-2dbinder-e6ea7d 625538ad3dfe95fd4b9f08f0f2ba3b21c8a9e4cc

  • version: 0.5.9.2
Latest release: about 5 years ago - 120 downloads - 1,731 dependencies
almahmoud/galaxy-its latest

  • version: 0.5.9.5
Latest release: over 4 years ago - 916 downloads - 2,571 dependencies
dhspence/docker-cnvkit latest

  • version: 0.5.3.1
Latest release: almost 8 years ago - 118 downloads - 542 dependencies
intelliseqngs/smoove-hg38 1.1.0

  • version: 0.5.5.2
Latest release: about 4 years ago - 100 downloads - 540 dependencies
mmlooney/bcl2fastq 2.20.0.422

  • version: 0.7.1
Latest release: almost 3 years ago - 391 downloads - 576 dependencies