robertplayer/scidap-qiime2 stable

btrspg/r-env cache

koki/urchin_workflow_seurat 20251014

genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

mlepetit/ranalysis 3.3.4

weizhoujp/rchtc 4.3.0

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

crukcibioinformatics/sequencingbase 9.5.4

almahmoud/workshops-auto-spectratutorials latest

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

cheyne0328/rstudio zxy

frankfeng78/slkb-base 1.0.3

nciccbr/ccbr_r_4.3.0 v1

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

chriswyatt/chopgo latest

qdidiscoveryservices/seurat_cell_annotation latest

mattjmeier/r-odaf-hc-prod latest

broadcptac/panoply_so_nmf_report 1_3

haileyzhang/phospho-analyst v1.0.2

alanocallaghan/high-dimensional-stats-r latest

brianyee/cropseq-essentials 1.0.0

qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

sagnikbanerjee15/ngpint 1.0.0

chgyi/bio 3.5.1

tercen/compare_means_operator 0.1.9

commander121/rmarkdown 4.4.0d-b4

haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

tercen/diffcyt_operator 0.4.4

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

chgyi/metaware_rna_denovo latest

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

alexthiery/archr 3.1

cjchen/gxuclass 1.0

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

dhspence/docker-manta 1.5.0

denklewer/linseedv2 latest

alexthiery/schelper seurat-schelper-0.3.5

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

qdidiscoveryservices/flowr 1.0

genular/pandora 2.0.0

PANDORA - https://pandora.atomic-lab.org

atttilacs/dsp_geomxtools latest

tercen/flowcut_operator 0.1.8

tercen/normalyzer_operator 0.1.4

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

alenaerts/deseq2 v1

nciccbr/ccbr_fraser_1.10.2 latest

jafoltz/sc_python 8

mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

broadcptacdev/activedriver_mimp latest

chriswyatt/bioseqio_gffread latest

ethill/qiime2 latest

docker container for qiime2

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

mikisvaz/rbbt latest

gyusikhwang/tgs v1

alexsickler/open-pedcan latest

etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

emersonchao/dsc180b latest

broadcptac/panoply_so_nmf_sankey_report DEV

altyn745/txsim latest

ctomlins/fastqpuri latest

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

tercen/normalise_cytof_operator 0.2.3

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

gpato/lacen-app 3.1.0

dzhakparov/geneselectr-image latest

qdidiscoveryservices/flower v3

mattjmeier/r-odaf-hc-base latest

brusconi/seurat new

stormgod/deepmaps-cpu latest

bioboris/narrative aug24

sameetmehta/docker_report_apptainer devel

weishwu/planet 12052022

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

tercen/tercen_studio_flowsuite 0.0.1

apollodorus/polyglot v1

nfancy/scflow 0.7.4

qdidiscoveryservices/pseudobulk 2.0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

alexthiery/archr_seurat_signac_mega 3.2

bixbeta/pavian v1

yosuketanigawa/rstudio_yt latest

broadcptacdev/activedriver latest

sheddn/bioinformatics-tools latest

dhspence/docker-hiccompare latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

sebimer/samba-v4-qiime2 2024.2

daltoncp/rstudio_celegansbulksequencing 4.2_3