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Package Usage : cran : tximport

Explore the latest package usage data for tximport in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 53
Total downloads: 332,814
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ccdlstaging/dr_illumina 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 6,466 downloads - 893 dependencies
luisas/rannotation_forcats latest

  • version: 1.14.2
Latest release: over 5 years ago - 46 downloads - 89 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.28.0
Latest release: over 2 years ago - 160 downloads - 679 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.22.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.23.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 1.28.0
Latest release: 11 months ago - 930 downloads - 1,625 dependencies
dhspence/docker-rnaseq latest

  • version: 1.6.0
Latest release: almost 8 years ago - 210 downloads - 665 dependencies
mfsentma/atacseq latest

  • version: 1.22.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
dockerxialab/expressanalyst_docker 1.31

Perform raw RNA-seq processing (FASTQ to counts table) using the ExpressAnalyst interface.

  • version: 1.26.1
Latest release: almost 2 years ago - 868 downloads - 508 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.28.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
harshaldeokar/us_medgenome_v12 latest

  • version: 1.14.2
Latest release: over 2 years ago - 66 downloads - 2,611 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 1.28.0
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.28.0
Latest release: over 2 years ago - 26 downloads - 352 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.22.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.24.0
Latest release: over 2 years ago - 221 downloads - 2,089 dependencies
ccdlstaging/dr_salmon 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 62,302 downloads - 916 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.26.1
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
bjornson/st_viewer v1

  • version: 1.6.0
Latest release: almost 7 years ago - 47 downloads - 892 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 1.26.0
Latest release: over 2 years ago - 67 downloads - 1,319 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.22.0
Latest release: about 3 years ago - 115 downloads - 1,382 dependencies
danhumassmed/de-seq-tools 1.0.2

Software for Bioinformatics pipelines HOMER, DESeq2, samtools, edgeR, rclone

  • version: 1.28.0
Latest release: about 1 year ago - 77 downloads - 540 dependencies
koki/chapter3_2 20240925

  • version: 1.26.1
Latest release: over 1 year ago - 73 downloads - 1,196 dependencies
gaspardr/r-env test

My R environment for analyses and development

  • version: 1.26.1
Latest release: about 1 year ago - 370 downloads - 554 dependencies
mfsentma/rna latest

  • version: 1.22.0
Latest release: almost 3 years ago - 13 downloads - 807 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.28.0
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
viascientific/deseq2-docker 2.0

  • version: 1.26.0
Latest release: almost 3 years ago - 134 downloads - 375 dependencies
wlc27/dcanr v1

  • version: 1.26.1
Latest release: about 3 years ago - 94 downloads - 1,681 dependencies
koji11235/rnaseq_env latest

  • version: 1.14.2
Latest release: about 3 years ago - 87 downloads - 981 dependencies
ccdlstaging/dr_no_op 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 18,776 downloads - 894 dependencies
millerh1/ste v1.0

  • version: 1.26.0
Latest release: about 3 years ago - 9,949 downloads - 844 dependencies
alexdhill/vscode complete-seq

Multipurpose developer suite with VSCode base. Supports C++, python, R with notebooks.

  • version: 1.22.0
Latest release: over 2 years ago - 214 downloads - 1,510 dependencies
bigomics/omicsplayground v3.5.24

Self-service analytics for big omics data

  • version: 1.22.0
Latest release: 9 months ago - 52,691 downloads - 1,551 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.14.0
Latest release: almost 5 years ago - 7,929 downloads - 423 dependencies
ccdlstaging/dr_smasher 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 8,400 downloads - 884 dependencies
chgyi/trinity 2.8.4

  • version: 1.6.0
Latest release: almost 7 years ago - 21 downloads - 795 dependencies
ccdlstaging/dr_compendia 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 6,717 downloads - 877 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.14.0
Latest release: over 3 years ago - 1,345 downloads - 654 dependencies
ccdlstaging/dr_downloaders 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 129,262 downloads - 1,028 dependencies
ccdlstaging/dr_common_tests 1.45.8

  • version: 1.6.0
Latest release: over 2 years ago - 2,788 downloads - 784 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.14.0
Latest release: about 6 years ago - 69 downloads - 1,313 dependencies
bigomics/omicsplayground-base ub2204_v4

  • version: 1.22.0
Latest release: over 1 year ago - 1,636 downloads - 1,536 dependencies
doejgi/trinityrnaseq-wdl 2.15.1

  • version: 1.26.0, 1.14.0
Latest release: almost 3 years ago - 1,058 downloads - 980 dependencies
ccdlstaging/dr_downloader v0.8.9

  • version: 1.6.0
Latest release: over 7 years ago - 167 downloads - 663 dependencies
chriswyatt/perl_r_e1071 latest

  • version: 1.22.0
Latest release: about 4 years ago - 89 downloads - 268 dependencies
anand7899/rmarkdown latest

  • version: 1.26.0
Latest release: about 3 years ago - 268 downloads - 766 dependencies
koki/urchin_workflow_r 20250116

  • version: 1.24.0
Latest release: about 1 year ago - 129 downloads - 1,253 dependencies
chunjiesamliu/scmocha latest

  • version: 1.28.0
Latest release: over 2 years ago - 74 downloads - 1,258 dependencies
etretiakov/rocker-session latest

  • version: 1.28.0
Latest release: over 2 years ago - 81 downloads - 2,565 dependencies
luisas/rannotation latest

  • version: 1.14.2
Latest release: over 5 years ago - 37 downloads - 367 dependencies
bumproo/rnaseqclass23 latest

  • version: 1.28.0
Latest release: over 2 years ago - 605 downloads - 904 dependencies
costanzopadovano/bioconductor_r_image jupyter_notebook_version

Docker image preconfigured with R and Bioconductor for streamlined bioinformatics data analysis.

  • version: 1.29.3
Latest release: over 2 years ago - 74 downloads - 2,685 dependencies
brianyee/surf b77fd94

  • version: 1.22.0
Latest release: over 2 years ago - 25 downloads - 2,629 dependencies