qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

ocdr/ds-apps 1.0.43

koki/urchin_workflow_seurat 20251014

vanessa/seurat latest

mlepetit/ranalysis 3.3.4

gnwanne/atac latest

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

koki/tensor-project-parasite 20211013

nathanprovin/cellcom 1.2.2

matzieb/shiny-4.0.3-seurat4-spatial latest

rgregstacey/seurat_image 2.1

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

qdidiscoveryservices/seurat_cell_annotation latest

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

koki/velocytor 20221015

ztamayo/nbridge-os latest

ghhenry/curio-seeker-pipeline latest

brianyee/cropseq-essentials 1.0.0

koki/bindsc 20220609

uabbds/zebrafish_telencephalon_atlas_app 1.0.0

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mshriver01/share_task_seurat latest

mfsentma/atacseq latest

alexthiery/archr 3.1

avi156/rocker-binder-upd 4.2.2

nilesh0404/st_visualizer m1_0.1.2

alexthiery/schelper seurat-schelper-0.3.5

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

uvarc/rstudio tam5xe

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

jafoltz/sc_python 8

daltoncp/rstudio_celeganssinglecell 4.2_12

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

dpraveen511/spot spot_ec2

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

nikhil166/cellxgene_vip_docker v2.4

etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

gyusikhwang/tgs v1

granatumx/gbox-cellid-sctype 1.0.2

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

mshriver01/share_task_archr latest

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

mknudson/share_task_cell_annotation mei-cell-annotation

brianyee/r-essentials 2.0.0

mikesiwenwu/eversus_benchmarking v7_s3test

brusconi/seurat new

stormgod/deepmaps-cpu latest

lizzyr/pseudo_ko 1.0.3

apollodorus/polyglot v1

ucigenomics/cellchatnotebook 2.1.2

nfancy/scflow 0.7.4

qdidiscoveryservices/pseudobulk 2.0.2

cliu97/r4.3_seurat latest

payne6861/seurat v1.0.0

alexthiery/archr_seurat_signac_mega 3.2

bixbeta/pavian v1

zwcdocker/seurat latest

yosuketanigawa/rstudio_yt latest

andrewsg/archr dev

sheddn/bioinformatics-tools latest

elynrfw/gerald-test latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

luisas/rdeanalysis latest

almahmoud/terra-jupyter bioc

daltoncp/rstudio_celegansbulksequencing 4.2_3

jingxin/terrascpipe v0

koki/sctensor-workshop sha-fa8c4cf

dsouzd04/himc_zellkonverter 1.6.5

viascientific/rstudio-app-isee 1.0

njjtemp/scrattch-mapping 4.2.0

jackiezhuqi/bio-rstudio latest

dantingz/seurat 1.0.2

winuthayanon/rstudio 4.3.0

abelhj/rstudio 4.2.3

dabbleofdevops/r-datascience 4.2.2

crukmi/nas-app latest

jmonlong/terra-rstudio-custom 0.0.1

shl198/rna_ppl latest

btrspg/vscode-dkd-env latest

bicore/gcs_10x_rnaseq_qc 4.2.0

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

gcriogooglesamples/rethinking v2

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

felixschlesinger/assign_types v0.2

gaspardr/r-env test

My R environment for analyses and development