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Package Usage : cran : Rsamtools

Explore the latest package usage data for Rsamtools in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 369
Total downloads: 1,467,025
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 2.14.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
btrspg/r-env cache

  • version: 2.16.0
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 2.14.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.10.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 2.14.0
Latest release: about 3 years ago - 90 downloads - 494 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 2.16.0
Latest release: 4 months ago - 821 downloads - 739 dependencies
prismcmap/sushi v0.0.2

  • version: 2.6.0
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
luisas/rannotation_forcats latest

  • version: 2.2.3
Latest release: over 5 years ago - 46 downloads - 89 dependencies
globusgenomics/picrust 1.0

  • version: 2.10.0
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.8.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 2.12.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 2.2.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
tariship/dev_sync_directories latest

  • version: 2.14.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
kuglerf/tft_r v5

  • version: 2.14.0
Latest release: over 2 years ago - 26 downloads - 812 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.22.0
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 2.8.0
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 2.6.0
Latest release: about 4 years ago - 116 downloads - 318 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 2.16.0
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.16.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 2.14.0
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.10.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
jpdodson/dsrna_docker latest

  • version: 2.14.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
seglh/exomedepth f4716ad

  • version: 2.12.0
Latest release: about 2 years ago - 1,680 downloads - 548 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 2.14.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 2.10.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 2.2.3
Latest release: about 4 years ago - 110 downloads - 828 dependencies
js2264/fourdndata 1.1.0

  • version: 2.17.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.14.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.12.0
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 2.2.3
Latest release: over 2 years ago - 37 downloads - 725 dependencies
koki/workflow 20210327

  • version: 2.6.0
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.14.0
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 2.14.0
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.15.1
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 2.10.0
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 1.26.1
Latest release: over 7 years ago - 193 downloads - 427 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 2.16.0
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.11.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.26.1
Latest release: over 7 years ago - 165 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.32.3
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 2.16.0
Latest release: 11 months ago - 930 downloads - 1,625 dependencies
benolson/r_dada2_for_ris latest

  • version: 2.14.0
Latest release: over 2 years ago - 43 downloads - 657 dependencies
broadinstitute/pcawg_full 7

  • version: 1.28.0
Latest release: over 8 years ago - 420 downloads - 889 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.14.0
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.26.1
Latest release: over 7 years ago - 147 downloads - 453 dependencies
mfsentma/atacseq latest

  • version: 2.10.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 2.14.0
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 2.14.0
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 2.14.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 2.16.0
Latest release: over 2 years ago - 1,044 downloads - 784 dependencies
chlazaris/dge_env 0.1

  • version: 2.10.0
Latest release: over 2 years ago - 17 downloads - 320 dependencies
alexthiery/archr 3.1

  • version: 2.10.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
cjchen/gxuclass 1.0

  • version: 2.16.0
Latest release: over 2 years ago - 19 downloads - 657 dependencies
cjchen/tbtoolszone 2.0

  • version: 2.10.0
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
smemane20/error_thres_amd_64 latest

  • version: 2.16.0
Latest release: over 2 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 2.16.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 2.14.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.32.2
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 2.16.0
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
luisas/rde latest

  • version: 2.2.3
Latest release: about 5 years ago - 66 downloads - 549 dependencies
uvarc/rstudio tam5xe

  • version: 2.16.0
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
markshill/clustering_tree_building-env latest

  • version: 2.14.0
Latest release: about 3 years ago - 46 downloads - 1,416 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 2.2.0
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
dvav/bioconductor latest

  • version: 2.16.0
Latest release: over 2 years ago - 72 downloads - 297 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 2.6.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
almurphy/mungesumstats latest

  • version: 2.17.0
Latest release: over 2 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 2.14.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
alexthiery/enhancer_annotation_and_motif_analysis latest

  • version: 2.6.0
Latest release: almost 3 years ago - 72 downloads - 210 dependencies
andrewatmp/qiime_unzip latest

  • version: 2.14.0
Latest release: over 2 years ago - 151 downloads - 598 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 2.2.3
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 2.14.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 2.2.3
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dhspence/docker-rstudio-python latest

  • version: 2.14.0
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
gru4/scan2workinghg38 latest

  • version: 2.10.0
Latest release: over 2 years ago - 71 downloads - 776 dependencies
crpeters/r-methylkit 4.2.1

  • version: 2.14.0
Latest release: about 3 years ago - 80 downloads - 383 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 2.14.0
Latest release: over 2 years ago - 291 downloads - 218 dependencies
khoulaha/shatterseek v1.0.0

  • version: 2.6.0
Latest release: almost 3 years ago - 28 downloads - 664 dependencies
gesiscss/binder-mortonjt-2dq2stats-2dworkshops-912d21 82c8b562545acab37a854f097c33806fa7c2a4b3

  • version: 1.34.0
Latest release: almost 5 years ago - 35 downloads - 1,679 dependencies
jpsmith5/rpipe 0.3.1

  • version: 2.14.0
Latest release: about 3 years ago - 69 downloads - 262 dependencies
gru4/scan2fixedhg38 latest

  • version: 2.10.0
Latest release: over 2 years ago - 88 downloads - 777 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 2.14.0
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 2.6.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
nikhil166/cellxgene_vip_docker v2.4

  • version: 2.2.3
Latest release: over 2 years ago - 392 downloads - 2,101 dependencies
galclbl/epityping latest

A repository for the epityping tool container

  • version: 2.14.0
Latest release: about 3 years ago - 123 downloads - 123 dependencies
alexsickler/open-pedcan latest

  • version: 2.2.3
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
gesiscss/binder-r2d-g5b5b759-fraunhofer-2ditmp-2dalister-26fdaf 11bce8bee1e1b0252d2ee5356a32b5b44c0dff4d

  • version: 2.2.0
Latest release: over 2 years ago - 67 downloads - 1,853 dependencies
emersonchao/dsc180b latest

  • version: 2.14.0
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 2.2.3
Latest release: over 2 years ago - 74 downloads - 383 dependencies
sparktx/gviz 1.40.1

  • version: 2.12.0
Latest release: about 3 years ago - 34 downloads - 288 dependencies
shiramaty/qiime2-sratools latest

  • version: 2.10.0
Latest release: about 3 years ago - 24 downloads - 319 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 2.2.1
Latest release: over 5 years ago - 10 downloads - 431 dependencies
pauffret/peak-calling-box 1.0

  • version: 2.2.0
Latest release: almost 3 years ago - 24 downloads - 212 dependencies
chriswyatt/genespaces latest

  • version: 2.10.0
Latest release: over 3 years ago - 54 downloads - 221 dependencies
lorentzb/srs 2.0

  • version: 1.34.0
Latest release: almost 3 years ago - 78 downloads - 269 dependencies
mshriver01/share_task_archr latest

  • version: 2.10.0
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
gpato/lacen-app 3.1.0

  • version: 2.10.0
Latest release: 5 months ago - 1,022 downloads - 801 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 2.10.0
Latest release: over 2 years ago - 158 downloads - 316 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 2.14.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 2.15.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 2.16.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies