Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : Rsamtools

Explore the latest package usage data for Rsamtools in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 369
Total downloads: 1,467,025

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 2.10.0, 2.14.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 2.8.0
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 1.22.0
Latest release: almost 5 years ago - 52,130 downloads - 432 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 2.6.0
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 2.2.3
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.30.0
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: 1.34.0
Latest release: almost 4 years ago - 10,364 downloads - 331 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.30.0
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 2.9.1
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
nfcore/airrflowreport dev

  • version: 2.14.0
Latest release: over 1 year ago - 994 downloads - 409 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 2.2.0
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 2.6.0
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
nfcore/hic dev

A docker container for the nf-core/hic pipeline.

  • version: 2.4.0
Latest release: about 3 years ago - 15,244 downloads - 257 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 2.6.0
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 2.2.0
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.32.3
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.32.3
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
seglh/exomedepth f4716ad

  • version: 2.12.0
Latest release: 12 months ago - 928 downloads - 548 dependencies
gene110/nipt_report latest

  • version: 1.30.0
Latest release: over 3 years ago - 785 downloads - 676 dependencies
dhspence/docker-sicer latest

  • version: 1.32.2
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
dhspence/docker-basestation latest

  • version: 1.32.2
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 2.4.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
dhspence/docker-dss latest

  • version: 2.2.3
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
biocontainers/bioconductor-rsamtools v1.26.1-2b1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 538 downloads - 416 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 502 downloads - 576 dependencies
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 533 downloads - 430 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 529 downloads - 457 dependencies
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 522 downloads - 498 dependencies
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 522 downloads - 431 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 2.8.0
Latest release: almost 2 years ago - 237 downloads - 227 dependencies
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 520 downloads - 423 dependencies
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 477 downloads - 568 dependencies
koki/sctensor-experiments 20220208

  • version: 2.10.0
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
koki/biocdev 20230818

  • version: 2.17.0
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 2.14.0
Latest release: about 2 years ago - 262 downloads - 766 dependencies
prismcmap/sushi develop

  • version: 2.6.0
Latest release: 10 months ago - 221 downloads - 723 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.8.0
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 1.30.0
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 160 downloads - 427 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 156 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.32.3
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
broadinstitute/pcawg_full 7

  • version: 1.28.0
Latest release: about 7 years ago - 146 downloads - 889 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 1.26.1
Latest release: over 6 years ago - 140 downloads - 453 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.32.2
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 2.2.3
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.26.2
Latest release: about 4 years ago - 103 downloads - 1,468 dependencies
broadinstitute/pcawg_tokens latest

  • version: 1.24.0
Latest release: about 8 years ago - 90 downloads - 1,472 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.32.3
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
crukmi/mesa main

  • version: 2.13.4
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 2.10.0
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
gene110/reportnipt550 latest

  • version: 2.2.3
Latest release: over 3 years ago - 88 downloads - 577 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 2.14.0
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
intelliseqngs/task_bam-exon-depth 1.0.4

  • version: 2.2.3
Latest release: over 2 years ago - 67 downloads - 547 dependencies
koki/annotationhub 20210323

  • version: 2.6.0
Latest release: over 3 years ago - 73 downloads - 1,250 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 2.2.1
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
tipsarin/rstudio 4.1.3viraltrack

  • version: 2.10.0
Latest release: almost 2 years ago - 54 downloads - 981 dependencies
lorentzb/gene8940_r 1.0

  • version: 2.14.0
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
dhspence/docker-vep 93

  • version: 1.32.2
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 2.14.0, 2.2.3
Latest release: over 1 year ago - 331 downloads - 980 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 1.22.0
Latest release: almost 6 years ago - 55 downloads - 705 dependencies
maestsi/nf-m6anet v1

  • version: 2.6.0
Latest release: almost 2 years ago - 54 downloads - 645 dependencies
khoulaha/jabba v1.0.0

  • version: 2.14.0
Latest release: almost 2 years ago - 42 downloads - 2,527 dependencies
koki/tensor-projects-machima 20220827

  • version: 2.12.0
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
hoonbiolab/pepatac v1.1

  • version: 2.8.0
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
mbwali/jupyterlab qiime2023

  • version: 2.14.0
Latest release: over 1 year ago - 56 downloads - 1,941 dependencies
qdidiscoveryservices/batch_correction latest

  • version: 2.4.0
Latest release: almost 4 years ago - 40 downloads - 790 dependencies
crukmi/mesa_dependencies latest

  • version: 2.14.0
Latest release: over 1 year ago - 63 downloads - 1,393 dependencies
broadcptacdev/panoply_so_nmf_report 9bb503e

  • version: 2.2.3
Latest release: over 1 year ago - 95 downloads - 725 dependencies
trust1/rbox v1

Methylation array work toolbox

  • version: 2.6.0
Latest release: over 1 year ago - 48 downloads - 912 dependencies
koki/urchin_workflow_seurat 20230616

  • version: 2.14.0
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
dmiller15/minfi 4.2.0

  • version: 2.12.0
Latest release: over 2 years ago - 35 downloads - 1,415 dependencies
kcapd/wings-genomics-full latest

  • version: 1.26.2
Latest release: almost 4 years ago - 33 downloads - 1,502 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.30.0
Latest release: almost 5 years ago - 34 downloads - 10,669 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 2.2.3
Latest release: about 3 years ago - 36 downloads - 828 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.14.0
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.12.0
Latest release: about 2 years ago - 39 downloads - 1,452 dependencies
koki/workflow 20210327

  • version: 2.6.0
Latest release: over 3 years ago - 40 downloads - 1,265 dependencies
galclbl/epityping latest

A repository for the epityping tool container

  • version: 2.14.0
Latest release: almost 2 years ago - 56 downloads - 123 dependencies
hoonbiolab/lohhla v1.1

  • version: 2.2.0
Latest release: about 3 years ago - 30 downloads - 708 dependencies
jpsmith5/peppro latest

  • version: 2.14.0
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.15.1
Latest release: almost 2 years ago - 91 downloads - 1,601 dependencies
chgyi/qiime2 23.09

  • version: 1.34.0
Latest release: 11 months ago - 29 downloads - 271 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.11.0
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
hoonbiolab/titan v1.1

  • version: 2.2.3
Latest release: about 3 years ago - 29 downloads - 754 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.14.0
Latest release: 12 months ago - 89 downloads - 1,496 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 2.10.0
Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies
luisas/rfasta latest

  • version: 2.2.3
Latest release: about 4 years ago - 22 downloads - 501 dependencies
crukmi/target-snakemake-docker latest

  • version: 2.2.3
Latest release: over 2 years ago - 21 downloads - 1,148 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 2.2.0
Latest release: almost 2 years ago - 21 downloads - 685 dependencies
markshill/clustering_tree_building-env latest

  • version: 2.14.0
Latest release: almost 2 years ago - 20 downloads - 1,416 dependencies
luisas/rde latest

  • version: 2.2.3
Latest release: almost 4 years ago - 20 downloads - 549 dependencies
sheddn/bioinformatics-tools latest

  • version: 2.10.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
weishwu/systempiper 12022022

  • version: 2.12.0
Latest release: almost 2 years ago - 19 downloads - 1,383 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 2.16.0
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.10.0
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies