Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : Rsamtools
Explore the latest package usage data for Rsamtools in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 369
Total downloads: 1,467,025
More details on packages.ecosyste.ms - JSON
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 2.10.0, 2.14.0
nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 2.8.0
biocontainers/control-freec v11.5_cv1
- version: 1.22.0
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 2.6.0
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 2.2.3
mirekphd/ml-cpu-r36-rs-cust latest
- version: 1.30.0
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 1.34.0
mirekphd/ml-cpu-r36-base latest
- version: 1.30.0
biocontainers/isee-galaxy v3.13_cv1.0.0
- version: 2.9.1
nfcore/airrflowreport dev
- version: 2.14.0
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.
- version: 2.2.0
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 2.6.0
nfcore/hic dev
A docker container for the nf-core/hic pipeline.
- version: 2.4.0
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 2.6.0
nfcore/scrnaseq dev
A Docker Container for the nf-core/scrnaseq pipeline.
- version: 2.2.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 1.32.3
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 1.32.3
seglh/exomedepth f4716ad
- version: 2.12.0
gene110/nipt_report latest
- version: 1.30.0
dhspence/docker-sicer latest
- version: 1.32.2
dhspence/docker-basestation latest
- version: 1.32.2
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 2.4.0
dhspence/docker-dss latest
- version: 2.2.3
biocontainers/bioconductor-rsamtools v1.26.1-2b1-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1
- version: 1.26.1
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: 2.8.0
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1
- version: 1.26.1
koki/sctensor-experiments 20220208
- version: 2.10.0
koki/biocdev 20230818
- version: 2.17.0
anand7899/rmarkdown latest
- version: 2.14.0
prismcmap/sushi develop
- version: 2.6.0
hoonbiolab/hmftools v1.1
- version: 2.8.0
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: 1.30.0
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1
- version: 1.26.1
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1
- version: 1.26.1
chgyi/bio 3.5.1
- version: 1.32.3
broadinstitute/pcawg_full 7
- version: 1.28.0
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1
- version: 1.26.1
dhspence/docker-manta 1.5.0
- version: 1.32.2
dhspence/docker-hiccompare latest
- version: 2.2.3
kcapd/wings-genomics latest
WINGS workflow system with software for genomics operations.
- version: 1.26.2
broadinstitute/pcawg_tokens latest
- version: 1.24.0
mirekphd/ml-cpu-r35-rdp 20180918
- version: 1.32.3
crukmi/mesa main
- version: 2.13.4
testalabgh/downstream signac-1.4.0
- version: 2.10.0
gene110/reportnipt550 latest
- version: 2.2.3
dolphinnext/ont_variant_calling 1.0
- version: 2.14.0
intelliseqngs/task_bam-exon-depth 1.0.4
- version: 2.2.3
koki/annotationhub 20210323
- version: 2.6.0
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520
- version: 2.2.1
tipsarin/rstudio 4.1.3viraltrack
- version: 2.10.0
lorentzb/gene8940_r 1.0
- version: 2.14.0
dhspence/docker-vep 93
- version: 1.32.2
doejgi/trinityrnaseq-wdl 2.11.0b
- version: 2.14.0, 2.2.3
dhspence/encode-atac 1
encode atac pipeline docker image
- version: 1.22.0
maestsi/nf-m6anet v1
- version: 2.6.0
khoulaha/jabba v1.0.0
- version: 2.14.0
koki/tensor-projects-machima 20220827
- version: 2.12.0
hoonbiolab/pepatac v1.1
- version: 2.8.0
mbwali/jupyterlab qiime2023
- version: 2.14.0
qdidiscoveryservices/batch_correction latest
- version: 2.4.0
crukmi/mesa_dependencies latest
- version: 2.14.0
broadcptacdev/panoply_so_nmf_report 9bb503e
- version: 2.2.3
trust1/rbox v1
Methylation array work toolbox
- version: 2.6.0
koki/urchin_workflow_seurat 20230616
- version: 2.14.0
dmiller15/minfi 4.2.0
- version: 2.12.0
kcapd/wings-genomics-full latest
- version: 1.26.2
mirekphd/ml-cpu-r36-rs 20200131
- version: 1.30.0
hoonbiolab/variantannotation_r v1.1
- version: 2.2.3
mattjmeier/r-odaf-hc-prod latest
- version: 2.14.0
koki/velocytor 20221015
- version: 2.12.0
koki/workflow 20210327
- version: 2.6.0
galclbl/epityping latest
A repository for the epityping tool container
- version: 2.14.0
hoonbiolab/lohhla v1.1
- version: 2.2.0
jpsmith5/peppro latest
- version: 2.14.0
alanocallaghan/high-dimensional-stats-r latest
- version: 2.15.1
sagnikbanerjee15/ngpint 1.0.0
- version: 2.11.0
hoonbiolab/titan v1.1
- version: 2.2.3
haileyzhang/lfq-analyst v1.2.6
A docker container for LFQ-Analyst
- version: 2.14.0
prangannath/rna_seq latest
Container for EvolOMICS RNA_Seq pipeline
- version: 2.10.0
luisas/rfasta latest
- version: 2.2.3
crukmi/target-snakemake-docker latest
- version: 2.2.3
keithgraham5/cnvrobot_v4_2 latest
- version: 2.2.0
markshill/clustering_tree_building-env latest
- version: 2.14.0
luisas/rde latest
- version: 2.2.3
sheddn/bioinformatics-tools latest
- version: 2.10.0
weishwu/systempiper 12022022
- version: 2.12.0
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5
- version: 2.16.0
biodancer/nasap_performance latest
write later
- version: 2.10.0